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GT23775

CSHL Arabidopsis genetrap mutant lines

Original: GT23775

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23775

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 528121 [Map]; Strand: w
      • AT2G02100.1 - [+] show detail - low-molecular-weight cysteine-rich 69
        Distance: -229; Region: promoter
    Flanking Genome Sequence: GT23775 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCTC TCTCGACCAG ATTGTGTCGC 
    TACACACCCA GATGTTGTCG ATATCTTCTT CTCATTCGAC CAGTCCTTCT 
    CGCATCACAT TTTGTATCAG AACAAAAATA ATCATATCTC TAGACCAGTT 
    CATAACTGAG TTTGCGGATG TTGTGGAGTC CACAATGATA ATGGCTATGT 
    AAAAAAACCA CTAAAAAGTA ACAACCAGTG CAATATTCAC GGGATAGAGT 
    ATTTTTATCA TATACCAAAA TGAAAAAGTT AGTGGGTTAT ATAAAAATTA 
    AACTTTGTAT TTATATAGCA AGTTAAAACG CAATTGATAA TAAATATCGA 
    ATACTTCTCT AATTATTACT TAGATAAGTA ATATTTGGGA TTAGTTACTC 
    TAAATTAAGT AGTATAATTG TGGCTATATT TTAAAGAACT GTTATGGCAG 
    ACAAAAAGCT GGTTGCTTTC TCTTTATCAT GTGACTTTAT AAGTTATACA 
    CGATTATCAT TTTCTCACTT CACACAATTC AACAAGTTTC CGGTTGGCCT 
    TAGTTTTCAG GTTCAATTTT AAGTGTAAAT TGACCATGAG AACACCTTCA 
    AAACGTGACT TGGCAATGGC AGTTACCACA AAGAATCCAA ACTTAGTATG 
    GCTTTGATTT ACTAGTGAAT TATTTTGTAT AGTCCTATTC AAATATTTAA 
    TCGCAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 528216 [Map]; Strand: w
      • AT2G02100.1 - [+] show detail - low-molecular-weight cysteine-rich 69
        Distance: -134; Region: promoter
    Flanking Genome Sequence: GT23775 - 5-prime edge 
    AATTTACACC TATGAAAGTG TCGGTAAAGC AAATAAAATC GAGAAACTCA 
    CACCACTCTT ATTCAAATCC AAAGTGAATA CTCCAAAAAT AAAGTAAATG 
    ATATTTATCC AAAAATATCT AACAAACGCG TAAAATGTGA ATTATCTTGA 
    ACGTTTTAAT ACCTCTTTAC TCTCTTTATA TAGTGCCATT TTCCTCACTA 
    GCAGCAACAC ACTTGAACAC TACTTTCGAA CTCTCTCTTC ATCTCACTCG 
    ACC

AT2G02100.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 69
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR