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Mutant Lines
GT23813

GT23813

CSHL Arabidopsis genetrap mutant lines

Original: GT23813

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23813

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 7266872 [Map]; Strand: w
- AT4G12140.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon1 (CDS)

TTACCGACCG TTACCGACCG TTTTCATCCC TATTCGTCTC CCTCGACCAT 
TTTATGACCA ACGGCGTTGA ATTGACCGTT GGCGTCACAG TTACTTACCA 
GAATGTCCAT GTCGAGGAGA CATCATCAAA GGAATCGAGG ATGGTTCGAC 
TAGGGAGCAT GAAAGCAGAG GAATTGAAGA GTTTTAACAT GGAAACAGAG 
TCGTGTTCCA TCTGTCTACA GAGTCGTGTT CCATCTGTCT ACAGAGTCTA 
GTCTCCAGTT CGAAAACAGA ACCCACTCGC ATGAGTTGTT CCCATGTCTT 
CCATAGTAGC TGTCTCGTGG AGTGGCTCAA GAGAAAAAAC ACTTGCCCGA 
TGTGTCGGAC TGTGCTCTAC GATCGATGAT GATGATTGGA ACAGAGGATT 
GAAACTAGGG TGTCATCTAG CTACTCTATT GCATTTAATG AAAAGTTTAT 
GTAATTTAGT TATCAAGGTT TCAAATTCTA TATCAATAAG AGGTTTTGTA 
ATAGCATCAT TACTTCTAAT AACATATCAA CAAGAGGTTT TGTAATAGCA 
TCATTACTTC TAATAACATT AACTCTAAAC TTTGCTGTTT TTAAGTTCAC 
ATGCAACTTG TAGACTCATC AATGTTTTCC TCAACAGACT ACACAGACTC 
ATCAATGATC TAACCTCATT AAACTGCTCC GGCAAAGAGA TCAACAAAAA 
TAT

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 19488825 [Map]; Strand: w
  - AT1G52325.1 - [+] show detail - Initiation factor eIF-4 gamma, MA3
    Distance: -407; Region: promoter
  - AT1G52330.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Distance: -118; Region: promoter
  - AT1G52330.2 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Distance: -118; Region: promoter
Flanking Genome Sequence: GT23813 - 5-prime edge
```
CATCAGTTAA GTTGATTAAT ACTATTGGCG TCCAAAGTAA TTACTTATTA 
AGAAAATACA ACCTTTCAAG TTCTTCTAAC CCCTACAGAT GATTAAATCA 
TTTAATAATA AACTCTTCAA TTATTACCTT AATTAACAAA CAAAAAAAAT 
ACAATCACGT ATATATATAT ATATTTTTAT CGACCTTACC AAACATCTCC 
TCTCTCATGA ACAATGACGG TAGAAGAAGA TCCTAAAGCA ACTCCGTCAT 
TACCAGACTA CAAGCCTTTA CCTTCATCAT CAAGTCACGA GCTAAAAGAC 
GCCGTTCTGA TCTCATCACA TCCTTCATCT CACTCG
```

AT1G52325.1

Model type: Protein coding
Short Description: Initiation factor eIF-4 gamma, MA3
Computational Description: Initiation factor eIF-4 gamma, MA3; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 659 Blast hits to 396 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 193; Plants - 86; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G52330.1

Model type: Protein coding
Short Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G13270.1); Has 133 Blast hits to 132 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G52330.2

Model type: Protein coding
Short Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G13270.1); Has 108 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G12140.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G12150.1); Has 7725 Blast hits to 7711 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 663; Plants - 3301; Viruses - 68; Other Eukaryotes - 1352 (source: NCBI BLink).
Link: InterPro Scan - TAIR