1. Home
  2. Mutant Lines
  3. GT23862

GT23862

CSHL Arabidopsis genetrap mutant lines

Original: GT23862

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23862

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14373223 [Map]; Strand: c
      • AT4G29140.1 - [+] show detail - MATE efflux family protein
        Distance: 2331; Region: intergenic
      • AT4G29150.1 - [+] show detail - IQ-domain 25
        Distance: -5544; Region: intergenic
    Flanking Genome Sequence: GT23862 - 5-prime edge 
    CCTGCTTCTC AGTTACATAA AATTTAGAGG TCAATTTAAT AAATAGTGAG 
    TAAGAAGAAG AGAAGGGTAA CTAAATAAAG GGAGGCCCCC TCGTGTGGAA 
    TGTGAGCAGT CCACTCCAAT TATATAACTT GTGCTCTGTC TTAATTTGTG 
    GGACATCTGC CACTGTTCTG CTTCTTCTTC ACTTTCTATC TCTCTCTCTC 
    TCTCAACTAC TTTTGTCTTC TCTCTCTCTT CCTCTCTCCC CCACACATAT 
    GTTATCTATT TTGGGGGCAG TGAAATTAAC TTCTTCTTTC TTTTGGCTCC 
    AACCCTTTTC ATCTCACTCG

AT4G29140.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, root; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G19700.1); Has 10278 Blast hits to 10238 proteins in 1962 species: Archae - 240; Bacteria - 7294; Metazoa - 150; Fungi - 320; Plants - 1306; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29150.1

Model type
Protein coding
Short Description
IQ-domain 25
Computational Description
IQ-domain 25 (IQD25); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 784 Blast hits to 779 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 731; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR