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GT23882

CSHL Arabidopsis genetrap mutant lines

Original: GT23882

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23882

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT23882 - 3-prime edge 
    ACCGTTACCG ACCGTTTTCA TCCCTATGTA TAACCAATGA ATAGAGAAAG 
    GGCATCAAGA TTTCTAAGTA ACATGGTATC AGAGCCTTCT CTCTAAAACC 
    TAAAATTCTC AGCAGCCGCC ACTCTCAAAA TTCTTTCTTC TTCTTTCACA 
    AACACTCTGT TTCTTCGTTT CTTCCTCTGT TCCTCTACTC AACCATGGCT 
    CAAGCAATCG ACAAAGTTTT CACTGTGACT CACATCAAGT CACACATTCC 
    TCTTGTTCTC GACATGCACA AGATGAACTA CGACGCATGG CGTGAGTTAT 
    TTGAAACTCA CTGCTACAGT TTTGGAGTCT TCGGACATCT CGACGGCACG 
    TCCACACCAG CAAACGCCGC CGACATGACA TGGAAAGAAC GTGACGGCAT 
    CGTTAAGATG TGGATCTATG GCACAATCTC TTCATCTCAC TCGACCAGAT 
    CGTATCGTTA CCCGACCGGA TCGTATCGGT ATATTCATCT CACTCGACCA 
    GATCGTATCG TTACCCGACC GGATCGTATC GGTATATTCA TCTCACTCGA 
    CCAGATCGTA TCGTTACCCG ACCGGATCGT ATCGGTATAT TCATCTCACT 
    CGACGAGATC GTATCGTTAC CCGACCGGAT CGTATCGGTA TATTCTTCTC 
    ACTCGACCAG ATCGTATCAT TACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1973474 [Map]; Strand: c
      • AT4G04110.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT23882 - 5-prime edge 
    ATATACACAT ATACAAGAAT GTTCTCTAAG TAATATCAAT ACACATATGG 
    CAAGTGAATA ATACGTATTC CAATTCCCTT GTCTATCAGA GAATCCCTAA 
    TCGCTCGTTT AAGATCGGGA TCAAGCGATT GGCTTCTCTT GATCTCGTTA 
    TATTTAAAAG AAATGATCAG TTTCCGGTCA AGCTCCTTGA GAAAGTGGCT 
    GAGGAATGTT TGACGGATAT CTTCTCCGCT GAAGCTCGGA AAGGCGTCGT 
    ATAGCCAATT CCGAGAAGTA GAAGAAGAAG ATTGAGCCAT ACACCTTCGT 
    AAATGGTGCT GAGAAGAAAT GAGATATAAC TTCGAGACAA TTTTATGAGT 
    TTTTATTTTT CGACGAAACT TTGTTGAAGT TTTCACTTGA CTAGCTAGGT 
    CAAGAACAGA AGTCAGCAAA CTAATATTGA AAACTAAAAC AAAGGAAAAT 
    ATAATAATTT AGAAACTACA GTAAAACATC TGTAATGTGG TCGAATGAGT 
    ACCTCGTAAG TTTCTTAAAT CATTATCTCA CACAACTATT TTCTTCGTAA 
    ACATTTGCTT TACTTGCTGG AGAAGGAATC TTTTCTTTTT AGAATTTTGT 
    ATGCTTGTTT TTTTTTGTAT GTTCGTTTTA TGTTCATCTC ACT

AT4G04110.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain family protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 1617 Blast hits to 1532 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1617; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR