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GT23905

CSHL Arabidopsis genetrap mutant lines

Original: GT23905

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23905

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18376513 [Map]; Strand: w
      • AT3G49580.1 - [+] show detail - response to low sulfur 1
        Distance: -729; Region: promoter
      • AT3G49580.2 - [+] show detail - response to low sulfur 1
        Distance: -729; Region: promoter
      • AT3G49590.3 - [+] show detail - Autophagy-related protein 13
        Distance: -966; Region: promoter
    Flanking Genome Sequence: GT23905 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT ATATACCATG 
    GTAGTTCATC GATCACAAAA TAAGTAACAG CGATATTATT ACGGCCGCCT 
    TCTCCCCAAT TATTAACTTG TTAGTTAATA ATCTAAAGAA TAAATCCTTG 
    TCACAAACTC ACAATATCAC AAGAAAGTGA GAAACACTAT AGTGATTGGC 
    TTCAGACGTC ACCTATTTCA AGCCCTACTA ACTCAATAAT GTAATCAATA 
    TATACCACAT ACATACATCA GAGATCAGAC CAACACATTT TTATTACAAA 
    TTTGACGGAC CAGAGATTTA TAAATAATTA AATTGAATTT GTGTAAACCA 
    CGGCATTAGA ATTATTAATT ACTATTCTAT TTACACGTTA ACATATATTT 
    ATCCATTTAT CAATTTATAG TTGTATAGAC GGCAATTTGT TTATTAATTT 
    TAAAGTTAAA ACTAGTTAAT AACATGGATA AACCGGAAAT TTCGAAATTA 
    ATTTGGTTTA AGTTTCATAT AAAAAATATT TAAATCGAAC CTAGCGAAAC 
    TGTGATAAAA AAACGAAAAA AAAAATTGAA CATTCTAAAA ACATAGTAAA 
    TTTTCTCTTT TGGGGTGGTC TATGCATACA TAAGCCATGA GTATGTTTAA 
    GTTTCAAGTA AGGAGAAAAT ATTGACCGAA ATCAAAAGTG AGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 329443 [Map]; Strand: w
      • AT5G01840.1 - [+] show detail - ovate family protein 1
        Distance: 3927; Region: intergenic
      • AT5G01849.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -2330; Region: intergenic
    Flanking Genome Sequence: GT23905 - 5-prime edge 
    TCTCTTATTA CATAGCCTTA AAAGTAGTTA TACTTAAGGA TATTTTTCGC 
    CACCGTATTG TTTAATAATA TTAAAAATTC GTATAATGCA CGTGTCTTTG 
    GTACGTCCAT GCAAAACTTG TAATGCGAGA CGACGAAGAC AGACGACACG 
    AGGAACAACC AACGCTACAT GAACTGGACC ACTTTTTTAT TTTAAAGTAT 
    AAAATCAATG TCGTTTGTTG TTTTGTGTTT CTGTTTCAAC ACCGTAAACT 
    AAAAGTTTTA AAACATTTTC ATACAGTAAA TTAATGTTCT TCTTTAACAG 
    AAACTAAGTT AATTTTTCCT TTTAACAGAA AACAGAATAA GTTACCCTTC 
    TACCCAAAAA AATAATAACT TTTCAAAGAA TTCCATTATG AGTTATAATT 
    CCATTAAATT TAATATGATA ATGGAACCCA CATTATTGAA TTAAGTTAAA 
    AAACACGTAT GAATAACTTT TTCTTACTAT GAACACCCTC ACTTTTATAT 
    AAAGACACCA AATCCTTCCA TCGTAGAT

AT3G49580.1

Model type
Protein coding
Short Description
response to low sulfur 1
Computational Description
RESPONSE TO LOW SULFUR 1 (LSU1); BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1); Has 73 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49580.2

Model type
Protein coding
Short Description
response to low sulfur 1
Computational Description
RESPONSE TO LOW SULFUR 1 (LSU1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1).
Link
InterPro Scan - TAIR

AT3G49590.3

Model type
Protein coding
Short Description
Autophagy-related protein 13
Computational Description
Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1).
Link
InterPro Scan - TAIR

AT5G01840.1

Model type
Protein coding
Short Description
ovate family protein 1
Curator Summary
Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.
Computational Description
ovate family protein 1 (OFP1); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of unidimensional cell growth; LOCATED IN: nucleolus, cytoskeleton; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 3 (TAIR:AT5G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01849.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR