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GT23946

CSHL Arabidopsis genetrap mutant lines

Original: GT23946

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23946

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 289943 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -3450; Region: intergenic
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 660; Region: intergenic
    Flanking Genome Sequence: GT23946 - 5-prime edge 
    ATAGATGCAG CTACACTAAT AAAACAATTT GTGTGTGGAT CATTACATCA 
    TTTGATTTTA AGTTTCCTTT ATAGTTTACG TTTAAAAAAA AAAAAAAATT 
    TCCAAAATTT TTTTTTTGGG GGGGGGGGGG GCCCCGCTTT TTCCCCCCCG 
    GGTAAAAACC CCCCCCGGGG CTTTTTTTCC CCTTTGGGAA AAAGAAAAAA 
    ATTTTTTTTT TTACCCCCCC GGAAAAAAAT TCCCCCAAAA AGGAAAAAAT 
    TTTTTTTCCC CCCCCCCCCC CCCCCCCCCC CTTTTTGGGG GAAAAAAAAA 
    TTTTTTCCCC CCAAAAAAAT CCCCCCCGCG TGGGGGCCCC CCCCCCCCCA 
    AAAATTTAAA AAAACTTTTT TAAAAAACGC CCAAAAATTT TCCAACCCCC 
    CCCCCCCCGG GGGGGTTTTT TTTTGGTTCC CCCGGGGGGA AAACCCCCCC 
    TCCCCCCCCG GGGGGGGCCC CCCCCCCGCG GTTAATTTGG GGGTCCCCCT 
    TAAAAGGCGC GCAACCCCCC CCCCCGGCCC CTTTTTTTGG GGGGCCCCCC 
    CCCCCCCC

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01660.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR