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GT24040

CSHL Arabidopsis genetrap mutant lines

Original: GT24040

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24040

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2680290 [Map]; Strand: w
      • AT1G08465.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 509; Region: intergenic
      • AT1G08470.1 - [+] show detail - strictosidine synthase-like 3
        Distance: 1837; Region: intergenic
    Flanking Genome Sequence: GT24040 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA ATTTTTCCCC CGTAAAAGTG 
    TGCCTACGGT CGAGAAAAAC TTATATTTTT GTCAAAGTCG CATCATTGAG 
    GTAAAATGGT ATCGACCAAA ACTAGACCGT CCCGTTGCAC GCTGCTTAAG 
    ATTTTCTTTG AAATAGTGAG CCAATCAGCA GCATAAAAGT GTGACATATT 
    ATTAATCATG ATACTCAACC GGATTATGAG TTTTGTGGCT GACAAGAAAA 
    GACGCGAACA TTGATTTCTC ATTGATTAAA AAAAAAGTAT TAAAAACAAC 
    CCAGGTGAAC TATTCATTGG AGAGCCTTTG CTTTTTGCAA AAAAGGTTTC 
    TTTGGAATGA GTGAGTTTCA AAATTATCTC ATCACCAAAA AAGTTACCTT 
    TTTTTATCCC AAGATGGAAT TTATATATCT TTTACTACCC AATCAATGGA 
    TATACCTGTG CTTCAATGTA TACCCAAACT CTAAATATCC ATGAAATTGA 
    TAAAGAAACA ATCAATTTCC CCAAACTTCC CCCTTTAACC CCAGGTATTA 
    TCAACAATAA TTACCGTAAA CCTGGGGATT AAAAATATAA GGTCGGGACC 
    CCACCTTT

AT1G08465.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs
Computational Description
YABBY2 (YAB2); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 446 Blast hits to 444 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 433; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08470.1

Model type
Protein coding
Short Description
strictosidine synthase-like 3
Curator Summary
Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational Description
strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR