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GT24061

CSHL Arabidopsis genetrap mutant lines

Original: GT24061

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24061

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 808942 [Map]; Strand: w
      • AT4G01860.2 - [+] show detail - Transducin family protein / WD-40 repeat family protein
        Distance: -882; Region: promoter
      • AT4G01860.1 - [+] show detail - Transducin family protein / WD-40 repeat family protein
        Distance: -882; Region: promoter
      • AT4G01865.1 - [+] show detail - pre-tRNA
        Distance: -600; Region: promoter
      • AT4G01870.1 - [+] show detail - tolB protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24061 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ACGGATGGAC CATGGATTGA 
    CACTATGCCT TGCTGGTCTC CGAAAGGAGA TCTCATCGGA TTCTCATCTA 
    ATCGTCATAA TCCAGAGAAC ACGGCCGTGT TCGGTGCTTA CGTGGTGAGA 
    CCTGACGGTA CTGGTTTGAG GAGGATTCAA ATTTCGGGAC CGGAAGGGTC 
    GGAGGAAGCG GCGAGGGAGA GAGTTAATCA TGTGAGTTTC AATAAAGATG 
    GTGATTGGCT TGTTTTCGCG GCGAATTTGA GCGGAGTAAC GGCGGAGCCG 
    GTGACGATGC CGAATCAGTT TCAGCCTTAT GGGGATTTGT ACGTTGTGAA 
    ATTAGACGGA ACGGGATTGA GGAGGCTGAC GTGGAATGGG TATGAAGATG 
    GGACTCCTAC GTGGCATACT GCTGATGAAT TGGATTTGAG TCAGTTGAAT 
    TTGAACGGTC AAGATGGTGA CAAGCTTGAA GGTCAGTTTG AGGAGCCGTT 
    GTGGATTTCT TGCGATATCT GAATGCGATT TCTCTTTATC TTATAAAAGG 
    ACAGTCATAT TTATGTAATC TCGCTTTTTT TATTTCAATA AAACAAACAA 
    AAATAAATGC ATTTAGCATT ATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 809038 [Map]; Strand: w
      • AT4G01860.2 - [+] show detail - Transducin family protein / WD-40 repeat family protein
        Distance: -978; Region: promoter
      • AT4G01860.1 - [+] show detail - Transducin family protein / WD-40 repeat family protein
        Distance: -978; Region: promoter
      • AT4G01865.1 - [+] show detail - pre-tRNA
        Distance: -696; Region: promoter
      • AT4G01870.1 - [+] show detail - tolB protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24061 - 5-prime edge 
    ACCGTCGTAT TCCACCGCCG TTAGATTCTC CGTTAACGGC GTCTACAATG 
    TAGAGATTCT TATGACCTGA TCTACCAGAT CGGAACACGA TTGATTTACC 
    GTCGGGTGAG CAAGACGGAA AAGCGTTATT CCCAGTGTTC TCTAGAGTGA 
    GAATCTTCAC ATCACAAGGA AGCTCTTCTT TATCAGCGGT GAGATCTGAT 
    GGATCGAACT TGATTCGAGC TATCTGAACC GCGATTCTCG CCGGAGAGAA 
    GATTGGACCT AGAGATGTGT AGATTACATG ACGCTCTGTT GGACTCCATG 
    AATTGTAGAA AGCTGTACGG TCTTTGATCA ACGTCCATCG TTTTGAACCG 
    TCGGATTTAG ATACTTTGAT TCCACCGTTG ATGTCGAAAT CGGAGTTCAA 
    TGCGATTAGA TCACCGTTGG GAGATGATGA TGGAAACGAT CCGTTGATTC 
    TTAGTAATCG GAGGGTTTTG ATTGGTGAAA CGATGGATTC GATGTTAGGT 
    ACGATTGACT CGCCTTGAGT TGACTCGCCT CTGAATCGGT GGTAGCCGAG 
    GAACTCGGAG TCTGGAGACA CGAAAGGGTT GTAATGTTGG AAACTCGGAT 
    TGAGTGAC

AT4G01860.1

Model type
Protein coding
Short Description
Transducin family protein / WD-40 repeat family protein
Computational Description
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 18202 Blast hits to 10734 proteins in 529 species: Archae - 38; Bacteria - 4707; Metazoa - 5622; Fungi - 3824; Plants - 1793; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01860.2

Model type
Protein coding
Short Description
Transducin family protein / WD-40 repeat family protein
Computational Description
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01865.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR

AT4G01870.1

Model type
Protein coding
Short Description
tolB protein-related
Computational Description
tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 6090 Blast hits to 4220 proteins in 1098 species: Archae - 42; Bacteria - 3414; Metazoa - 20; Fungi - 42; Plants - 120; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).
Link
InterPro Scan - TAIR