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Mutant Lines
GT24078

GT24078

CSHL Arabidopsis genetrap mutant lines

Original: GT24078

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24078

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 17909885 [Map]; Strand: w
- AT4G38180.1 - [+] show detail - FAR1-related sequence 5
  Distance: -208; Region: promoter

TACCGACCGT TACCGACCGT TTTCATCCCT ATTTAAAAGT CAATTTTTCC 
TCTCCTCCAC TCGCAACTGA TAGTGAACCA TACGGTAAGC GTAAAAGAGG 
ATGGGCCTTA TAAAGTAAAT GAAGAGGGAG TGGGCCTTAT AAAATTATAA 
ATGAAGAAGG AATGGGCCTT ATAAAATAAA TGAAGAAGGA ATGGGCCTTG 
CTTAAATTAA AAAAAGAGAA TTAGAAGCAC CGTCTGTCTT CCTCCTCCGT 
GCCCTCCGAC GACTCTATTC CCAGTCTCCC TCCTCCGTCG TCTCTCATCT 
TCCTTTTCAT TCTTCGGTTA TTATAACGTA ATCAATTACA AGTTCCCTTA 
TCTCTTCTAT TCTGGTTTCT CCCGCGCACG AACGCGCATT CCCTCGTCTT 
CGCTGCCTCC CAATCTCAAT CTCAAACTTG AAATCAAATC ACGACTGTAA 
GTGGTTCTAT CTACAGTAGC TAGCTATTTC ATCCTGTTGT GGACAATAAA 
TAGATAGAAT TCATCCCTGA AGACAAGGAG GATATGATGG ATAATGAAGT 
GCTCGACTTC GATATTGGTG TA

5 prime edge [+] show sequence

Chromosome: 4; Position: 17909973 [Map]; Strand: w
- AT4G38180.1 - [+] show detail - FAR1-related sequence 5
  Distance: -296; Region: promoter
- AT4G38190.1 - [+] show detail - cellulose synthase like D4
  Distance: 0; Region: exon3 (3UTR)

TTTAAGACGA AATGATTGAT ACAAAGGCTG ATTTATACAG TCATGACATC 
CCAATCCAGA TATACATGTA GTTATCTGAA AATTTACTAC CAGGAACAAA 
AACAAAAACA AAAAGAAACA AAGATAGTAT ACGTATTAAT TTCTTGTGAT 
TAGTCTACAA AACTCTCAAG TCGCCTATAT GAATGCTTTT TTAATTACGG 
GAATTGAAAA CCACCGCCTC CAACACCCTC TGCAGCAGCT GCAGGTCCGG 
TGTTTGGGTT TATGGCCGTC CACAGTAGAG AGATGGTGAT GGCAATGAGA 
CCTGCCCACA CAAAAACTAT GGTTGGAGTT TTGCCTCTTC GTCCCATCAA 
TCCTTTTGCA AATGGATACA AATGCGCCAA CACCCAGAAG CTGAAAAATG 
CTCCTCCGAT TAGCTTGCTC CATTGTGGCA CCGCTTGGTA TATTGTCCTG 
ATGAACGCCA CCACAATCGC TATTATGTTC ACCATTGCTA TCACTATAGG 
CGGTATCATC AGCGACGACC ATTTCACTAT GTACAAATCC GCGTATATGT 
CTTCATTGTC ATCTCCCCCT GACTTGGTCG TCAAGGTAAA GGAGATCTCG 
ATCCCTGCAA TCACTTTGAG GACTCCT

AT4G38180.1

Model type: Protein coding
Short Description: FAR1-related sequence 5
Computational Description: FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38190.1

Model type: Protein coding
Short Description: cellulose synthase like D4
Curator Summary: encodes a gene similar to cellulose synthase
Computational Description: cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).
Link: InterPro Scan - TAIR