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GT24109

CSHL Arabidopsis genetrap mutant lines

Original: GT24109

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24109

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22549108 [Map]; Strand: c
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24109 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGATATCCGA GGAAAACACA 
    TCGAGCACTG CGATGTCAAA CTTATCATTC GAACGTCGTA CTAACTTTGC 
    ATAGCATAGA CATCCAAACG TCTTTATGTC ATCGTATGAA GGAGACTTTT 
    GAAACAAAAC TTCATATGGT GTCTTCCCTT TGAGTAGAAT CGATGGCGTT 
    CTATTAATCA AATGAGTGGC CGCTTGAATG CTTTCACCCC AAAAACGAGT 
    TGGTAGTTGA GCTTGAAATA AAAGCGCTCG AGCAACGTTT AGTATGTGTC 
    GATGCTTTCT TTCAACTCTA CCGTTTTGTT GAGGTGTATC TACACATGAG 
    GTTTGGTGCG TGATACCATT TTCTGCAAAA TAGGAGCGCA TACACATGAA 
    TTCCGTACCA TTATCTGTTC TTATAGTCTT GACCTTCTTG TCAAAATTTC 
    GAAGGGCCCA AGCCACAAAG TTTTTAAGTA CTGTGGAGAC CGACGATTTC 
    TGGAGAAGTA AGTGTGTCCA AACAGCTCGG GAGAAATCAT CTACAATAGT 
    GAGAAAATAA ACCTCTCCAC AAGTAGCTTT TGTTCTGTAA GGACCCCAAA 
    CATCACAATG AATTAAAGAA AATAAATCAT CGGCTTTATT TGAATTATCA 
    AAAAACGAAA CACGATTTTG TTTTGCTCTA AAGCAAACAT CACAACATTC 
    CTCCAAAGCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22549016 [Map]; Strand: c
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24109 - 5-prime edge 
    ATCCATTTGG AAGAAGGATG GCTAGTAATG GACTTGCAAA CTGAGAAGAC 
    GTTTGTGTCC CGTGATGTTA TCTTTCACGA AGATTCTTTC CCTTACCCTT 
    CAAGTACTCT TGCGAGTGAA GATGATCACA TGATTACAAA CCCAGTGACT 
    ACTAGTCGAC ATGGGGAGTC TTTGTCACCT CTTGAAGATC AACCAATCGA 
    TCTAGATACA AGACTAGTCG ATTCAGACAC AGGACCGATC GATCCTGATA 
    CACGACAGAT CGATCCAAGC TCTGCAGAAG TCACAGACAC GACCCGATCG 
    ATCGATCCAG AGTCCAGATC GATCGATCCA ACACTTCTGC CCGATGACGT 
    AGAAATCCTA AACACGACGC GATCGATCGA TCCAGTTACA CAGTTAGTCG 
    AAACAGAAAC ATTAAACACT GATCGATCGA ACGATCCGGT GACTCGATCG 
    ATCGATCCTG TTAAACCAAC AGCATCATCT TCAAAGGAAA AGAAGGTCGT 
    TCAAACAGAA ACTGAGACTC GTACTGAGAC TGAAATAGAA GAACTTGGGG 
    TTGGCAAATG AAAGAAGATG AGGTCCGTAC TACTAGAGCC ATACGTCACT 
    TATTCGGGAA CGCAACTTGA TAACCCCCCT CATGCTT

AT3G60961.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Link
InterPro Scan - TAIR