1. Home
  2. Mutant Lines
  3. GT24146

GT24146

CSHL Arabidopsis genetrap mutant lines

Original: GT24146

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24146

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18035437 [Map]; Strand: c
      • AT4G38580.1 - [+] show detail - farnesylated protein 6
        Distance: 0; Region: exon2 (CDS)
      • AT4G38590.1 - [+] show detail - beta-galactosidase 14
        Distance: -655; Region: promoter
      • AT4G38590.2 - [+] show detail - beta-galactosidase 14
        Distance: -679; Region: promoter
    Flanking Genome Sequence: GT24146 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACATAAAG TCACTGTAGT 
    CGGCTACGTC GATCCCAACA AGGTGGTGGC TCGAATGTCT CACAGGACCG 
    GCAAGAAAGT CGAGCTCTGG CCATATGTGC CCTACGACGT GGTCGCTCAT 
    CCTTACGCTG CCGGTGTCTA CGACAAGAAG GCACCCTCCG GTTATGTCCG 
    AAGAGTCGAC GACCCCGGAG TGTCGCAGCT GGCTCGTGCT AGCTCCACCG 
    AGGTCCGCTA CACCACTGCA TTTAGCGACG AGAACCCGGC GGCTTGTGTG 
    GTCATGTGAT GTCATATGGA CTACTACTGT TTCAATTTGT TATGGCTTAA 
    TTTAATGTCT TGTTTTGTAC ATTAATACCA TAACGGTAGG TTTCTTGTTT 
    TGCTTTTAGT TCCTTGGTCT GTATTCCTTA CACTTTATGA TTGCAATATG 
    TGTTTTTCCC TTTCTTCCAA AGACTTTTAA TGTTAATAAA TATTTCTACC 
    CAAAATTAAA TTATTTTCAT TTATGGTTTG TAATTGTGAA GAAAGCTTCA 
    AATGCGGATC AAGTTGTAGT TAAGAAAACC ATTAATTTAA AATAGAGAGA 
    GTAGTTGAAA CAAGGGTTCC AAGCTTCCCT CTTTAACCTA GGACATCCTT 
    AAAACAAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18035346 [Map]; Strand: c
      • AT4G38580.1 - [+] show detail - farnesylated protein 6
        Distance: 0; Region: exon2 (CDS)
      • AT4G38590.1 - [+] show detail - beta-galactosidase 14
        Distance: -746; Region: promoter
      • AT4G38590.2 - [+] show detail - beta-galactosidase 14
        Distance: -770; Region: promoter
    Flanking Genome Sequence: GT24146 - 5-prime edge 
    GCTTTGGGGC TCCAACGTCA CAGAAGACAC ACCCTTCATG CCTTCGACAG 
    AACGCCGCAC TTTCCGCTCG CAACCTTCGC AGTCCATTTT CACTTTAATC 
    TCCACCGTCT ATCCTCATCA AGCAGTCGAC ACAAAACGAC AAAATTAGCC 
    TACTTTAAAA ATATCTAAGA AGAATAGTAA ATGTCCACAA TTGAAAGACT 
    TTAACCATAT CATCATGACT AGTGAGAAAA ATTAACGTGG TTGGTTTCCC 
    CGGAAATTAA TGATTTTATA TAGTATTCCT GACAGCGAGA AGAATACAAA 
    TCCCGGGGTA AAATCTAACA GATGGCTGTA TCAACTTATA TTTCAAATTA 
    AAAGAATCTA TTCGGTCGGC GTTAGGAAGG AACATTAACT CAAAACAAAA 
    ACTGCTTCAA ATAAAATCCC ACTTATATCA GGTAACAATT TGGATATACT 
    TCTTCAAATA AAAGAAACAG AGATACTATT AAAAAAGATC TGAAGTAAAA 
    AGGGTAACAC AAATTAGCCA GCCAAAACCA CAATTATAAA CTTGCTAATG 
    ATGTCTATTT AGGGAACTAT AATATACGAA ATCTACTAAG TAACACTCAA 
    ACTTTCCTAG AAACCTTCGA AGCTGGTTT

AT4G38580.1

Model type
Protein coding
Short Description
farnesylated protein 6
Curator Summary
putative farnesylated protein (At4g38580) mRNA, complete
Computational Description
farnesylated protein 6 (FP6); FUNCTIONS IN: metal ion binding; INVOLVED IN: heat acclimation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G35060.1); Has 1169 Blast hits to 1088 proteins in 38 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38590.1

Model type
Protein coding
Short Description
beta-galactosidase 14
Curator Summary
putative beta-galactosidase (BGAL14 gene)
Computational Description
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 23317 Blast hits to 9736 proteins in 810 species: Archae - 62; Bacteria - 1372; Metazoa - 9840; Fungi - 2130; Plants - 1323; Viruses - 462; Other Eukaryotes - 8128 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38590.2

Model type
Protein coding
Short Description
beta-galactosidase 14
Curator Summary
putative beta-galactosidase (BGAL14 gene)
Computational Description
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 3072 Blast hits to 2969 proteins in 587 species: Archae - 15; Bacteria - 892; Metazoa - 685; Fungi - 433; Plants - 695; Viruses - 19; Other Eukaryotes - 333 (source: NCBI BLink).
Link
InterPro Scan - TAIR