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GT24151

CSHL Arabidopsis genetrap mutant lines

Original: GT24151

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24151

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110974 [Map]; Strand: w
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -948; Region: promoter
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -804; Region: promoter
    Flanking Genome Sequence: GT24151 - 5-prime edge 
    TGAGCTTCTT TCCGTGCACC TCAACCATTA TTTCATACAA AAAAAGAACC 
    ACAAATTCCT GCACCAACAC ACATATTTGA AGACCTTTAA TTTTGAGTGG 
    AAAAAGATAG TCCAATAGTT TGGCTACACC TATCTTGGAC TATATATATT 
    AAACACATTT CGCAATCATC CAAAGACTCC ATCTCATACA ACTAGACACT 
    ACATAAAAAC GGGTATTCTA GCACTCGGAA AATGCTATCT AATAATAAAG 
    TAATGTTGCA AATCTATAAA GTTGAGCAAG TAAATATCAC ATGATCAGTC 
    TAATTTCCAT CTCCCATAAT TTCCTTCATT TGTTGAATTA TTTCTCTATC 
    AGTGTTTGAT CAGGTTAGAA CATGTGGCGA GCTCATGACT CAGGCCCATT 
    AACAGGCCAG CCGGGATTTC CCGGTTCAAT CAAATTCTCG ATTTTATTCA 
    CGTTATTCCT CGGTTTAAAC CGGTATTGTC GGAGGTGCTA ATTCCTGCAC 
    CAACAATTAG TCCCCCCCCA GTTCGGCAAA TCCAAGTTGC TTAATTCAAA 
    ATTTCCAAAT TTAAAAATTG AATATTCAAT TTA

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR