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GT24187

CSHL Arabidopsis genetrap mutant lines

Original: GT24187

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24187

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7963375 [Map]; Strand: w
    Flanking Genome Sequence: GT24187 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTTAA TCTATACATT TACTGGTTTA 
    TATTGAGCAT CTATAGAAAA GGACGATGAT TTTGCTGAAT ATTAAACACT 
    ATTTATGTCT GGTGCCTTTA GCTAGTAGGT GTACGTCAGA ACATGATTCC 
    AATTATTAGA CAATAAGACA AATCTCAGAC GACACACAGT ACTAAAAAAG 
    ATGTACTTTG GCATAATCAG AGATTTTAGC CCTCTAAAAC ATGTTCATTC 
    GTGGGTGCCA CGGAATAACA TTCTTTGACA ATGATATGTT CATTTATTAA 
    AATGAAAAAT TAATCAAGAT GATTCCTCAC TAACCAAACC ATTTTTTTCT 
    TTTCTTTTGT GCAGCCTCTT GTAAACTAGT TCATCTTGTG TAAATCTCTT 
    TGATCTCTTG GGATGATTGA GTTCTTGAAT CGAAGTTACT GGCTGGCCTA 
    AAGATGTGAA AAGAAGTACA TTTATCAAAA AATATTCAGG GGTTCTTGTC 
    TTCTTTTTAA TTTTCACCTT TGAACATGGT TAGAAAATCG AAATAGTTCT 
    CCAAATCTTG GAATCTTATC TTCAAAAAAT CTTCGGCGCC TTTCTTACGC 
    TTGTTGGGCT TCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7963469 [Map]; Strand: w
      • AT2G18328.1 - [+] show detail - RAD-like 4
        Distance: -924; Region: promoter
    Flanking Genome Sequence: GT24187 - 5-prime edge 
    TTACCCAAGT TGCTCAACGA TCTTGAAGCC AATAATGGCA TGATTCGCTT 
    TTTGTCACAC TCCGGTGAAT AAAGACTTCA ACAGAGCTAA TCAGATCGAA 
    AAGACATCTA TCACTGCAAA GAAGTACTTA ACTATATACT TTTCTCGATC 
    ACACAAGATG GAAAAATTGC AAGAAATATT ACACACAAGC TTAACAATTC 
    ACCTACAACT ACAACACTAC AACAGATACT CAATAAATTT CAGTAAATAT 
    AAGATTACCT GAAGTTGCTC TTTTTTTATT TATTGAATAC CATGAGGTTT 
    TGGGCCGAAA CCCATAATTC TCCAAAGCCC GAAATCACAT CATGTAATAT 
    TAGTTTCATC TCACTCGACA AACAAACCGG CGACCTCTAA ACATGTAAAT 
    TGCTTAACGA TCTTTGGAGC CAAGAATGGC AAAATCACAA TCCCACGATG 
    GAAACAATAT AAAAGTTAAC TAAGCTAATC CAACAATGCA AAGAGGAACT 
    CTATAGAGAT TATATTATTT TCAATCATAC AAGAAAAAAA AATTGCAAAA 
    AATATTAAAC ACAAGCTTAA CAATCACATG CTTTATGAAT AATATCGGAT 
    ACAATAGGGG GTTAATT

AT2G18323.1

Model type
Pseudogene
Curator Summary
Pseudogene of ATMG00450
Link
InterPro Scan - TAIR

AT2G18328.1

Model type
Protein coding
Short Description
RAD-like 4
Computational Description
RAD-like 4 (RL4); FUNCTIONS IN: DNA binding; EXPRESSED IN: rosette leaf; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: RAD-like 1 (TAIR:AT4G39250.1); Has 590 Blast hits to 589 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 0; Plants - 467; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR