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GT24198

CSHL Arabidopsis genetrap mutant lines

Original: GT24198

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24198

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13899258 [Map]; Strand: w
      • AT5G35732.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 871; Region: intergenic
      • AT5G35735.1 - [+] show detail - Auxin-responsive family protein
        Distance: 1494; Region: intergenic
    Flanking Genome Sequence: GT24198 - 3-prime edge 
    CTGAGAGTGT GACTACCATC CACTAAGGTA CCACAAAGAC AAATATTCGT 
    TAAAAACTTG GCAAACTATT CAGTCATTGG TAGAACGGAC TCTAAAATGC 
    CTTTTCCAGA TCTTAGTTTA TCAATCAAAA ATTTCTTTTT ACCGTGTTCT 
    TTTATATTTC ATCTTATAAT CGTATAAAGA GGAGGTTAGG GCATTCGGAT 
    TTCGAATCGA ATTTGGTTCG GATTTTTTTT GGATTCGAAT AATTCGGATG 
    AAGGAGTTTT TTATCCGTTC AGATTAAATG ATTATTCGGT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11112333 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24198 - 5-prime edge 
    GGTGCGACCC ATCCAATCTG CCTCTCCACT CTTGTCGGAA TCCCGTTAAG 
    CACTGTAGCC CTTGCATTCG CCACAAATAC TTCCTTCGCG ACATCCTTGA 
    TGAACTGAAC TCTATCCCTG CATTTCCTTT TCTCACCAAA AATGTTACCG 
    CATCTCCACT TCCATCCCCA CCAAACCGCC ATAGCAAACA CCGTGGACCA 
    AAAGCTCTCT TGAAAAGGGG TTTCTTCGTG CAAATTATCA AACACCCATT 
    CAAACAAAGT CTTGTCAAAA AACGCACGCC GCTTCCTCTG AGGCACAATT 
    CTAGTCCAAA TCCCTGACAT AGCTGGACAA TCTCTGAAAA TGTGTAAAGT 
    GGTCTCTACT CCCCCTTTAC AAATCTGACA AATCTCCAAC TCACCGATAT 
    GCCTTCAATA ACGCTCTGCA TCTGTCATAA TCCCTTGATT GACCACTAAC 
    CAAAAAAAAG CTCTCACACG TTCTGGAACC TTAACTCTCC ATATCCAATA 
    AAAAAATTTC TCCATATTAG GTCGTGGACT ATCATCCCAA CTCAGCATAT 
    TATAAGCGGA CGATACACTG AATTGGCCAT TCTGACTCTC ATTCCAGGAA 
    ATTCTGTCTC TCCCCACTGT C

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G35732.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35735.1

Model type
Protein coding
Short Description
Auxin-responsive family protein
Computational Description
Auxin-responsive family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT5G47530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR