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GT24220

CSHL Arabidopsis genetrap mutant lines

Original: GT24220

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24220

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26366361 [Map]; Strand: c
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -363; Region: promoter
    Flanking Genome Sequence: GT24220 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTACT CTCTTGGGTC TTCCCTTTAA 
    TTTTTGCTAC TGAAATCGAT GTGTTGTCAA AAACAATAAA GTATTATCTC 
    AGTAAATTAA AAAGAAAAAT AGATGAAGGG GGTATTATGG TCTTTTAGAC 
    GATGAGCAAA GAAAATCCCG CACGTAAGTC AAAAAAGCTG CTAAGTAAAC 
    TACAAATACC CACGAGGACA GGTTAGGGTC ACGTGCGACG TTCATCTCAC 
    TCGACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26366259 [Map]; Strand: c
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -261; Region: promoter
    Flanking Genome Sequence: GT24220 - 5-prime edge 
    TTTAAGCAAC ATGATATTTC AATGGGAACA CAAAATCAAT ATGAAGATTT 
    ATTATTTGGT CTAAAAATAT TTTAAAAAAA AACACCTCAA TTTTTTTTTT 
    AACTAAAAAA GGGGACAAAT GGGGCAAGCC CAGGACAAAA GGGGTATTTA 
    ACCCCCGGAA CTGAACTTGC CCGGGGGGGG CAGGGGCCAA AAAAAAAATT 
    AAAAACCGGC TAAAGGCGGG AAAAAACCCG GCCAACAAAA ACCGGGTTTT 
    TTTTTGGGGT TTTGGCCGCT TTTTAATTTT TTCCCCCCAA AAAAAAGGAA 
    AAAAAAAAAA ACTTTGGGCC CAACCAAAAA AAAACCCCCC CTTTTTTAAA 
    TTGCCCCCTT GCTTTAAAAA ATTCCCCCCC CCCAAAAAAA ACCCCCAAAC 
    CAATTTCCTT CCCCCTTTTC CCCTTTCAAA AAATCCCCCC CGGGGGATTC 
    TAAAATTTCC CCCAAAATCT TTTTTTTTTT GGGTTTGTCC CCAAAATTTA 
    GGGGTCCCAA CCAATTCCAA AAACCCTGGA AAAACCCAAA ATTTTGGGTA 
    AAGGGGGGGG AAAAAAAAAA CCG

AT5G65920.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G49810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR