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GT24223

CSHL Arabidopsis genetrap mutant lines

Original: GT24223

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24223

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1046422 [Map]; Strand: w
      • AT4G02380.1 - [+] show detail - senescence-associated gene 21
        Distance: 0; Region: exon2 (CDS)
      • AT4G02380.2 - [+] show detail - senescence-associated gene 21
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24223 - 5-prime edge 
    CAGATCATTA CCCACTAATC TCCTCTTAAA GACCTTGACA AAATTACATG 
    TAATAATAAT CAATCACTGC TTGTTGTTCA AGAGAGCTGC TCGTAGCTCA 
    GCCGCGTCAA TCTCGTTGGA ACCGGTTTCG GGTCTGTAAT AACCGGTTTT 
    GGGATCTGGA ACCCAAGAAA TCTTCTGGGT TGATTCTTCC ACTCCCTTCT 
    TCTTCATCTC ACTCGACAAA NAAGCTCCAC TTCTTCCACC GCTCGAAACG 
    CTCCCTTGCG CCGCCGTGGC CGCATAACCA CGTCTGTTAT CACACAAAAA 
    ACGACACCGT TTAGAAAAAA ACAGAGCATA ACTACAAGAA AAAAACAGAG 
    CATAAAGTAA AAAACAGAAC AATAGAGACT TACCGGAAGA TAGCATTGGA 
    GAGTTCACGA AAGACAAAAG CAGATACGAT CTTAACGTTA AAAATAGAAC 
    GAGCCATTTT CGAAGTAAGT GGTTTCTTGA AAAGAGAAAA AACAAACTTT 
    TTATTCTTGT ACCTTCTTCT

AT4G02380.1

Model type
Protein coding
Short Description
senescence-associated gene 21
Curator Summary
Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational Description
senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 181 Blast hits to 176 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02380.2

Model type
Protein coding
Short Description
senescence-associated gene 21
Curator Summary
Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational Description
senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 166 Blast hits to 166 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR