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GT24280

CSHL Arabidopsis genetrap mutant lines

Original: GT24280

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24280

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22700190 [Map]; Strand: c
      • AT5G56040.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 1562; Region: intergenic
      • AT5G56050.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 772; Region: intergenic
    Flanking Genome Sequence: GT24280 - 5-prime edge 
    TAGTTCTGTT TTATTCACTT TAGCTTCCAC GGCAAGCATC AAGGCCTTCT 
    GATGCATCAT TTTTTACCAT CTTAAGGAAC CCATTGTTTC GAAATGGGGT 
    CACAGTCTGC CGCAAATTAA GAAATCCTAG AACTAGAAGA TCAGATTCGT 
    ACTCAGCATT ACGTTCCTCA TCTAGAAAAA ACCCTAATCC AACACCTGAG 
    AAACGCATCC CTCAATGTTA AACGTTATAT TGAGAAATTG GTTAACAAAA 
    CAACACTTTG GTTAAACCAA TTACGGTTCT CCGAATTGGT TTACTCAGTC 
    GTATTTTAAT TTTGTCATTT AACTCGATAC GATAGAAATC TTCTTGTACA 
    TATTTAAACG GACTCATTTG AAACACAACA GGCCCGTTAG GCCCGCGAAT 
    TTGAAACCCA TTATATGTAT GTATCCGGAT CTCATACCCG GTTAAATATC 
    TCTAGGAGAA ACTCTTGCAT GGATGATGCA TGGGCACAAG ACTTGAAAAT 
    GAAAATCATG AGATGATGTA ATGTTAGCTC ACAACAATAC ATCGAATCGA 
    ACACATGAAG TGGACTCCCG TACATTCCGC ATAATCATCA TTAGCTTTTT 
    GTTGCTT

AT5G56040.2

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 231331 Blast hits to 125911 proteins in 4380 species: Archae - 141; Bacteria - 23597; Metazoa - 71861; Fungi - 8804; Plants - 101197; Viruses - 340; Other Eukaryotes - 25391 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56050.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G26490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR