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GT24293

CSHL Arabidopsis genetrap mutant lines

Original: GT24293

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24293

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19080221 [Map]; Strand: w
      • AT2G46490.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 168; Region: intergenic
      • AT2G46493.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 33; Region: intergenic
    Flanking Genome Sequence: GT24293 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA ATTGAACGTT TTAGATAAAT 
    GCTTTTTCTG GAGTGATGAT TTATGTTATT GATTAGAGAT TAATGATATT 
    ATTCACTTTA ATCAAACAGA TTCATAGTTT CATGCCCACG ATGAATTTGT 
    TATGATAATT ACAGGGACGA GAGATGCTTA ATTGCCACAG ATTAATTCCT 
    TAATTACTTT TGCTAAAGTT GCTAAATTAA TCTCCACAAG TTTATATGCT 
    AATCATTCAA AGTTTCAATC GTAAACAAAC ATTTTCGTTT CTTTTACAAA 
    AAAATAAAAA TACAATGACT GACATTATTT GGTTCTCAAA TACAATGATT 
    GAAAAGTTTA ATTAAACAGA GATTAGCAAA AGTTAACAAC CTGGAATTGA 
    TCATCATCAT CATCAATCAT CTTCACCTTC ATCAATCGCC CATAGAAGCT 
    GTTTATTAAA TCTGCTCGGT TCCTCCGTCG CAGCATTATC CACCGGTAAA 
    TCTGATGCCA GATTTGAAAG CGAAAAAAAC AAAAAAAGCG ATTGGAGATT 
    AGAAGAAGAC GACGATGAGG AGAAGAGATT CATAGCCATG ATGTTGCCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19080305 [Map]; Strand: w
      • AT2G46493.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24293 - 5-prime edge 
    CTGCGTTCAT AGCATTTCCT TCACGCACAT GAGTTCCGAC AAAGAGGACA 
    TGAACCATGA ATCTTGAGCC ACACATCAAT ACATTCCACA TGGTAGCAAT 
    GGTCACATTC CGGTATGAAA CGTACGGTCT CTTTGCTCGC ATACTCTGAT 
    AAACAAATGG GACACACAAT ACCATTAGTA CCCGAAAGCC TTCTGCTTTC 
    TCCCAACTCC ATTTTCTTGA ACGTTTCTAT TGTAGATTGG TCAAGACCCC 
    TCCTGGCCAT AACCTCTCTC GGCTGCTGCA TTACGGTTGC GGCTGCGATA 
    GCTGAATCGA ATCTTTCGGA GTCGTAAAGG CGGATAGCGA TACAAGTAGG 
    AAAGACAAAG ACGGTGACTG CTGACAAGCT TATAACTAGT ACTAGTACTC 
    CACTACTTAA ATTACCTGTC AAAATATTTC CAAAGTCAGC TTAAAATCTA 
    ATTAAACCAT CAAAATGTAA TCGCTCTATG TGTGGAATCG GTTTATCAAT 
    TAAAAAAAAA CAAGTTTACT TAAATCAAAT GC

AT2G46490.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46493.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46494.1).
Link
InterPro Scan - TAIR