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GT24299

CSHL Arabidopsis genetrap mutant lines

Original: GT24299

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24299

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28554394 [Map]; Strand: w
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24299 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGTTCCCACA TAACGTGGTG 
    TTCGACGAAG ACGAGATCCC TAGTGGTGTG GACGCAAGCA AGATCTCGAT 
    GGATGAGACA GCGCTTCTAA ATGGTGCAGG GGAGACTTAC GAGGTTACTT 
    TGACAGAGCC GGGCTCTTAC GGTTTCTATT GTGCGCCGCA CCAGGGTGCT 
    GGTATGGTTG GGAAACTCAC CGTCAAGTAA ATTGTCTAGA TATTCTCTTG 
    TTCGAGTAGG AGCTTACATA TTCATGATTT ATAAATCTAA TTTGGAAGAG 
    AATGTTGGAT TGATAAAGAG GATCATATAA TGTTTACTAT CATAAGTTAC 
    TGGTTTCAGT GGCTCTTTTG TACATTTTAA GTCACGGTCA TACAATCCGA 
    TAACCTTTCT CTGTGTCCGT GTAAAGAGCT TTTAGTTTGA ATAAAGTTTG 
    TTTTAGGTGT ATCTGCGTTG GGTTTACTTG CCTTACTTTG GTCCCAACGT 
    TTGAGTCTTT TAGAGGCCCA GCACGCCTAT ATATCACAAA TTGGGCCTAA 
    CGACTCAGGT TTTTTGGGGA AATATAGGAA ACAGGTTTAG CTAGGTGCTT 
    ACGCAACCAC TACTGACCCC CCCAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28554484 [Map]; Strand: w
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24299 - 5-prime edge 
    ACCCTGGCGT TGTTCTTGAA CACGATCTTC TCTCCTTTAG CCACCGTGAA 
    TTCAGATGGT ACGAAAGCAA GGGAACCGTC GTCGGATCCT AAAAGAACCT 
    CCATGGCCAT CGCATTTCCA GCTAAAACGA TCGAAGCTGC TGTTGCCACT 
    GCGATGACAC CGAAATCCTT CAAAGAGGAC TTCAAAGCGA GCTTAGGTAG 
    TTAGGTGGCG CCCTGGTGGC GTAAGAGGAT CTACTGATGG TGGATAATGT 
    CTTAGGTTTT GAGCTGACGG CGAGCTTTAG GCCGGTGAAA GAAGGGATGG 
    TGACGGTAGC TGATGTAATT GCGGCCATTT TCTTTACTTT TTGGGGTGTT 
    TTGTTGATCA CTTGTAAAGA AATGAAAACA TTATGGGATT TTTGATAAGA 
    TTTGAAGAGA AAATAAAGCG AGAGAGTTAT CTGCATGTGA TTGGTTACCC 
    TAAATGTTTT GTGAGGGGAC GTGGCATTGT TTGATAGCTT TGTCTAACGT 
    TGCATAAGTA GATAAGGAGA CTTTGAACAT TCCAAGTTTT CATTAGTATT 
    TCTTGTTCTT GGGGTATTTA TATTACTT

AT1G76100.1

Model type
Protein coding
Short Description
plastocyanin 1
Curator Summary
One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational Description
plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR