1. Home
  2. Mutant Lines
  3. GT24313

GT24313

CSHL Arabidopsis genetrap mutant lines

Original: GT24313

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24313

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108069 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24313 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACAGGAG ATAGATCTTA 
    GTGTTCACAC TATAAAGTCC CATGGAGGAA GAGTCGCTTC TAAACACAAG 
    CACGATTGGA TCATACTCGT CATCTTGATT GCCATCGAGA TAGGCTTGAA 
    CCTCATCTCT CCTTTCTACC GCTACGTGGG AAAAGACATG ATGACTGACC 
    TCAAGTACCC TTTCAAGGAC AACACCGTAC CTATCTGGTC TGTCCCTGTG 
    TACGCTGTGC TTCTTCCCAT CATAGTGTTC GTCTGCTTCT ACCTGAAGAG 
    GACATGTGTG TACGATCTGC ACCACAGCAT CCTCGGGCTG CTCTTCGCCG 
    TCTTGATAAC TGGTGTCATC ACTGACTCCA TCAAGGTAGC CACCGGACGC 
    CCTCGTCCTA ACTTCTACTG GCGCTGCTTC CCCGACGGCA AAGAGCTGTA 
    TGATGCGTTG GGAGGTGTGG TATGCCACGG CAAGGCAGCT GAGGTCAAGG 
    AAGGCCACAA GAGCTTCCCG AGCGGACACA CTTCCTGGTC CTTTGCGGGG 
    CTTACATTCC TTTCCCTTTA CCTCTCTGGC AAAATCAAGG CCTTCAACAA 
    TGAAGGACAT GTGGCTAAAC TCTGCCTCGT GATCTTCCCT CTGCTTGCCG 
    CTTGTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108147 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT24313 - 5-prime edge 
    CCTGATCTCC TGCATCCTCC CTCTCTGCGC CTCCTGGTCC TGCCACCAAA 
    AACACAAACA ATCATCACAG TCAACTAAAC CTTCTTCTAA TTGGATCTAA 
    ACAAACAATT CATGGCTCTC TAAGAAATAC TACTTGAGGG TTAGGGCTTG 
    ACATCTCCGG TTTGGATGAT AGTAACAACG GAATGCAATT CATTCTATCG 
    GATGAACAAA TTGGTTTAGG CAAACAAAGA ACTTTGTCAA AGACACGACA 
    ACACTTTGCT CTACGGATCC AGACACTTTT TGTCTGTCTG ATTCGTTATG 
    CTAAGCACAC CACTGTTTCA TTAACAATGT TTTCGTTGAC TCTATTTAAC 
    TACTTTATTT TCAATGTTAG GATTTTTAAA ATGATAAAGA AAAAAGGAGT 
    AAAACAGAGA ATAGTCGATT GAGGTTACCT GAAAATTGCG CCAAAATAAA 
    AAAGAAAAAA AAAACGACCC TATTGTCATC AAAAAGTGAA GATCTCGACT 
    AAAAGATGAA ATGAGGTTAA AAAGAAATGT GGATCTCGAA ACTTAGGAGT 
    AAAACAGAGG AATTGATCTA ACGAAGACTA TAGATAAATA GTCCGATGAG 
    GAGGAGGTAG AAGACGCGTT GTTAAACTTG CAAGTTTTGT TTTGTTTCCC 
    AACTTGACGG TTTG

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR