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GT24434

CSHL Arabidopsis genetrap mutant lines

Original: GT24434

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24434

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2979655 [Map]; Strand: c
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron2 (CDS)
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron1 (CDS)
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon2 (5UTR)
    2. Chromosome: 4; Position: 15557604 [Map]; Strand: w
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT24434 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ATCTGTGAAT AAGGTTCCTG 
    TAACCCCATT GGAGGACCGA CACTAGTCAT AACTTGCGGA CCAACACTAG 
    TCATAACTTG TGGACCACCT GAAAACGTTG GCTGTGGTTG AACCACGTTG 
    TAACCCCATT GCAGCTTGCT GGTAATGCTC AACCTTCCTG GGGTAGTTCA 
    TACATTGGTC AGAACTATGC AAGTTTCTCC AGAGCTTTCG GGTAGGTTTG 
    TGTTTGTTTC TTGTGCTTTT TATACCTATT AGAATTACTC TGTGGATGTC 
    ATTTCGACTA CGTGTTGTTT TCTTTTATAG GTCAAAACCT GTTGTGAATG 
    ACATTCTTGG TACTGGTTTG GGCACTAACA ATGCCATTAG AGAGGAGAGA 
    GAGGTAAAAT GACTTTGTCT ACATTTTGTT TGATTTTTGC TTTTGTAATG 
    TTTAAAAGCA GCTTAACTTA TCCTTTTTGC CTGGTGATCC TTGTCTCGAT 
    TTTTCCAAAA GTCAAAATCT ACTGAAGCTG CAATTGTTGG TGCTCAATTG 
    ACTCGATCTT TCCGTGCTCT TGATGTGGGA ACATCGAAAC GATTGTTTTC 
    TACAATCTCA GGGGATATAA AGACAACACA GGAGGAACCA AAAATCAAAA 
    GCTTTCGCCC TTTATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2983856 [Map]; Strand: c
      • AT5G09620.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24434 - 5-prime edge 
    GTGGCTGGAG AAGGCATGAT GGTTCAACCG CCACCAGCCC AGCCTCAGCA 
    GCAGCAGCAG CAGTACCAGG GAATGGGTCA ACCGGTTAGT GGCATGACCG 
    ATCTCAGAAC CGGACCGGAT GGGAAAGTGG CGGTTAACAT GGCTGCACCA 
    CAAGTTTCAG ATTCGGTGTG AGTGTGAGAT TGAGTTAACA TTGAGGTTAA 
    TGTTATGATT ATCCATTTCT TTAAACTTTA TGATATATGT GTAAAAGTGT 
    TTTTTTAGAT CAAACTAGGA ATCTGGATTT CTGATGAATC AATTGAAGCA 
    CTTTTGATGT TTTTATTTTA TTTTATTTTG GTAAACTTCT TTCAGAGTTC 
    TGTTTTTTTA ACTTTTGAAG TATGCTTTTG GACCTTTTCG TCTCCTGTCT 
    ATTGTTATGC ATCTATTTAG TGGTGTATAA AGAATATTAT CCAATTTCAT 
    ATGCATTAAA AGAGTTACGT TTATGTATCT TTAATTCACT CACACTGAAA 
    CAAGAATTTG AGAATTAGTA ATCCTTTAAA TCTATTTTGT ACTCGTTAAA 
    ACTAGAAATA GATTTGTATA AATGTTCATT GCAAAGAAAA AAGTGGTCCA 
    AAATCTAATT TAA

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.2

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR

AT5G09620.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT5G64430.1); Has 18668 Blast hits to 11149 proteins in 562 species: Archae - 0; Bacteria - 597; Metazoa - 7421; Fungi - 2059; Plants - 1927; Viruses - 138; Other Eukaryotes - 6526 (source: NCBI BLink).
Link
InterPro Scan - TAIR