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GT24460

CSHL Arabidopsis genetrap mutant lines

Original: GT24460

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24460

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 437387 [Map]; Strand: w
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: -145; Region: promoter
    Flanking Genome Sequence: GT24460 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ACTGTGGTCA GTTTCGGATA 
    TAAATGTTTT AATTTCTTAG TTTCCGTTTC TTCTTCTTCT TTTTTTTTTT 
    TTTTTTTTTT TGGGAAACGG GGGGAAAAAA AAAAAAAAAA CACAAACCCT 
    TTTTTTTTTT TTTTCGGGCC CCTTTAAAAA AAAAAAATTT TCCCCCGGGT 
    TTTTGGCCCC CCAAACCGGG GGGGGGGGGG TTTTTTCTCT TTTTTTTTCC 
    CCCCCCCTTT TTTTTTTTTA AAAAAAATTT TCCGAAAAAA AAGGGGAAAA 
    AAATTTTCCC AAAAAAAAAT TTTTTTTTTT TGGGAATTTT TTTTTTTTTG 
    TCCAAAAAAG GGTTTTCAAA AGGAAAAAAA AGGGGTTGCA AAAAAAAAAA 
    AACCCCCCCC CCCCCCCCCC CCTTTTTTAA AAAGGGGTTG AAAAAAAAAA 
    AAAAACCCTT TTTTTTTTGT TCCCAAAAAA AAAAAAAAAA TTTTTTTTTT 
    TCCCCCCCCC CCCCAAAAAA AATTAAAACC CCCCGGGGTT TTTTTTTTAA 
    AAGGGGGAAA AAACCCTTTT TTTTTT

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR