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GT24475

CSHL Arabidopsis genetrap mutant lines

Original: GT24475

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24475

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28554162 [Map]; Strand: c
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT24475 - 3-prime edge 
    GTAAACATTA TATGATCCTC TTTATCAATC CAACATTCTC TTCCAAATTA 
    CATTTATAAA TCATGAATAT GTAAGCTCCT ACTCGAACAA GAGAATATCT 
    AGACAATTTA CTTGACGGTG AGTTTCCCAA CCATACCAGC ACCCTGGTGC 
    GGCGCACAAT AAAAACCGTA AGAGCCCGGC TCTGTCAAAG TAACCTCGTA 
    AGTCTCCCCT GCACCATTTA GAAGCGCTGT CTCATCCATC GAGATCTTGC 
    TTGCGTCCAC ACCACTAGGG ATCTCGTCTT CGTCGAACAC CACGTTATGT 
    GGGAACCCTG CGTTGTTCTT GAACACGATC TTCTCTCCTT TAGCCACCGT 
    GAATTCAAAT GGTACGAAAG CAAGGGAACC GTCGTCGGAT CCTAAAAGAA 
    CCTCCATGGC CATCGCATTT CCGGCTAAAA CGATCGAAGC TGCTGTTGCC 
    ACTGCGATGA CACCGAAATC CTTCAAAGAG GACTTCAAAG CGAGCTTAGG 
    TGGCGCCCTG GTGGCGTAAG AGGATCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28553949 [Map]; Strand: c
      • AT1G76090.1 - [+] show detail - sterol methyltransferase 3
        Distance: -2168; Region: intergenic
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 38; Region: intergenic
    Flanking Genome Sequence: GT24475 - 5-prime edge 
    AGCTTTTAGT TTGAATAAAG TTTGTTTTAG GTGTATCTGC GTTGGGTTTA 
    CTTGCCTTAC TTTGGTCCCA ACGTTTGAGT CTTTTAGAGG CCCAGCACGC 
    CTATATATCA CAAATTGGGC CTAACGACTC AGGTTTTTTG GGGAAATATA 
    GGAAACAGGT TTAGCTAGGT GCTTACGCAA CCACTACTGA CCCACCCAAA 
    AAAATTGCAT TAACAAATCA CGAGAAAGAG AGAATATCAC GTGATGAAAT 
    CATTATTGAT TTTAAATAGC AAAAATGAAG ACGGATCAGG GATCCATTAC 
    CAAGGGTCAG GCAGGGAAAA ATGTCTATTT CGGTCGCCTG GTTTGATTTG 
    ATCTTTTGCT GAAGGAACAG GGAAAAAGAC AAATAACACA AATCACCCCA 
    CTCATATATG GCTGATATGT AACCGAAACT CTCTTTCTCG TAAAGAGTTC 
    CACGTTGAAA ATGATTCCCA TATCTGGACA AGTCTAGTTG CAATTCTAAA 
    TTAATT

AT1G76090.1

Model type
Protein coding
Short Description
sterol methyltransferase 3
Curator Summary
Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.
Computational Description
sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76100.1

Model type
Protein coding
Short Description
plastocyanin 1
Curator Summary
One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational Description
plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR