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GT24493

CSHL Arabidopsis genetrap mutant lines

Original: GT24493

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24493

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22188322 [Map]; Strand: c
      • AT3G60080.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24493 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTCAGAG GCTGAGATGA 
    GAATCAGATT ATCGGATCTG GCTACGATTG CTGCAGATGG TGATGATGTG 
    GAAGATGATT GGCTTGGAAT CAGAAACGCG TTGAGAAGAC TGGCTCGTCG 
    TCATGAGCAG ATGAGATTGG GAGTGGGAGA GATGGAGAGG AATTTGGCTA 
    GGACTGTTTC AGGTCTTGGA ATTGGTATGA GAAGAAGAGA AGAGATTGAA 
    GCAGACAGAA GCAACGTCAC AACGACGCCT TTGTAAGAAC GATTTCGAAA 
    TTCAAATATG AGTTTTTTTT TTGTTTGCTT CCAATTCTCA GCTCTCTGTT 
    TATTTTACCG ATCGGCGTTT TAATCGATTA TTGATTATAG TTACCATAAC 
    GAGAGTTTTT TTTTTTTTTT TTGGGCCATT GTTTTTTTTT TTTAAAAAAA 
    AGGGGGGGAA CCCCTTTTTT TTTGGGGGGG GCCCCCTTCC CAACCATTTT 
    TGGGGAAAAA AAACAAAGGG GGAGGGTTTT TTTCCCCTTT TTTTTCCCCC 
    CC

AT3G60080.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44330.1); Has 9920 Blast hits to 9845 proteins in 282 species: Archae - 0; Bacteria - 98; Metazoa - 2725; Fungi - 927; Plants - 4887; Viruses - 7; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR