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GT24549

CSHL Arabidopsis genetrap mutant lines

Original: GT24549

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24549

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3356027 [Map]; Strand: w
      • AT3G10720.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10720.2 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT24549 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCA TGTACTAAGC ACATTTTCTT 
    TTTCTGGTAT AGGGTTTACG TAAAACATGC GACAACGACA AAGATTGCCG 
    GAAAACTAGC CGGAACTTAG GGGAGCTAGG TGAGACCAGC GGCGGTTCCA 
    TCCTCGTGAG TAAAGCAGTG ATCGTCGGTC CGTTCAAATC CGACAACTTC 
    ACAACCATCA CCGATGCTAT TGCAGCCGCA CCTAATAACA CTAGACCAGA 
    GGATGGTTAC TTTGTTATCT ACGCAAGAGA AGGTGTCTAT GAAGAATATA 
    TTGTTGTTCC CATCAACAAA AAGAACTTAA TGCTTATCGG AGATGGGATC 
    AATAAGACGA TTATTACAGG GAACCATAAT GTTGTTGATG GTTGGACTAC 
    GTATAATTGC TCGAGCTTCG GTTGGTATTC

AT3G10720.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1); Has 2403 Blast hits to 2363 proteins in 309 species: Archae - 6; Bacteria - 557; Metazoa - 1; Fungi - 195; Plants - 1619; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10720.2

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1); Has 4750 Blast hits to 3228 proteins in 426 species: Archae - 6; Bacteria - 642; Metazoa - 199; Fungi - 573; Plants - 2288; Viruses - 376; Other Eukaryotes - 666 (source: NCBI BLink).
Link
InterPro Scan - TAIR