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GT24572

CSHL Arabidopsis genetrap mutant lines

Original: GT24572

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24572

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26622946 [Map]; Strand: w
      • AT5G66680.1 - [+] show detail - dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit f...
        Distance: -2279; Region: intergenic
      • AT5G66690.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: -2134; Region: intergenic
    Flanking Genome Sequence: GT24572 - 3-prime edge 
    TTATCGTTTG TTTGATTGCT GGTTTCCAAT TGCTCATAAT TTCTACTCCC 
    ATATATCACG ACACATGTCG GTTACTATTC CTTCTCATAG CTTTACGACC 
    GCCCATGAAA ATATTGACAT TCTCTAAAAT AATAGTTTTT TTTTACTTAT 
    CAGTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3355781 [Map]; Strand: c
      • AT3G10720.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10720.2 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24572 - 5-prime edge 
    GCACCTAATA ACACTATACT AGAGGATGGT TACATTGGTA ACTACGCAAG 
    ACAAGGTGTC TATGAAGAAT ATATTGTAGT TCCCATCAAG AAAAAGAAGT 
    TAATGCTTAT AGGAGATGGG ATTAATAACA CGATTATTAC TGGGAACCAT 
    AATGTTGTTG AAGGTTGGAC TATGTATAAT TGCTCTAGCT TCGGTTGGTA 
    T

AT3G10720.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1); Has 2403 Blast hits to 2363 proteins in 309 species: Archae - 6; Bacteria - 557; Metazoa - 1; Fungi - 195; Plants - 1619; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10720.2

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1); Has 4750 Blast hits to 3228 proteins in 426 species: Archae - 6; Bacteria - 642; Metazoa - 199; Fungi - 573; Plants - 2288; Viruses - 376; Other Eukaryotes - 666 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66680.1

Model type
Protein coding
Short Description
dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein
Curator Summary
Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.
Computational Description
DEFECTIVE GLYCOSYLATION (DGL1); FUNCTIONS IN: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: plant-type cell wall organization, protein amino acid N-linked glycosylation via asparagine, unidimensional cell growth; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit (InterPro:IPR005013); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66690.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.
Computational Description
UGT72E2; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G26310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR