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GT24578

CSHL Arabidopsis genetrap mutant lines

Original: GT24578

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24578

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3502458 [Map]; Strand: c
      • AT3G11170.1 - [+] show detail - fatty acid desaturase 7
        Distance: 6; Region: intergenic
      • AT3G11180.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -1746; Region: intergenic
    Flanking Genome Sequence: GT24578 - 5-prime edge 
    ACTATTTTCT CTCAATTATA CCCTATCAAT ATTGGTAAAT CCACCTTCGG 
    AAGGAAGAAT CTTATAAAAT ATATAAGGCG ATGTATATTT GATCAGTATA 
    AAGCTTCTCT ATCCGATACA TAAACATTTG GATCTGCTTA ATTTGTATGA 
    TATATACAAC AGCTCCTCCC TCGCTCACAT AATGATCTTC TTTTATACTT 
    TTTGCTAGAA TTTAAATGTA TCTAAGATAA TGCAATGTAT GGTATATATA 
    GCTTCAGTAT CGCAAACAAA TTTGTTGTTT CCATCTGATC GATCGTATTC 
    AGAGATACTA ACTCTCTGGT TGGTGACACA ATAAATTGAT ACAGTAAGCA 
    AAAAATCAAC TGGTCTGAAA TAGAAAAAAC TTCAATCTCA AGCCTGCTTC 
    A

AT3G11170.1

Model type
Protein coding
Short Description
fatty acid desaturase 7
Curator Summary
Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.
Computational Description
fatty acid desaturase 7 (FAD7); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to cold, response to wounding, fatty acid biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: plastid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has 2938 Blast hits to 2935 proteins in 698 species: Archae - 0; Bacteria - 1234; Metazoa - 17; Fungi - 265; Plants - 926; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11180.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1).
Link
InterPro Scan - TAIR