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GT24588

CSHL Arabidopsis genetrap mutant lines

Original: GT24588

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24588

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8206357 [Map]; Strand: c
      • AT2G18940.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G18950.1 - [+] show detail - homogentisate phytyltransferase 1
        Distance: -985; Region: promoter
    Flanking Genome Sequence: GT24588 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATTGA AAGACGTTAT 
    CCGAAATTGG GATTGAAGGA GAAGAAGAGT GAGTGAAAGT TAGCGCCTTT 
    GGGTTGAAGT TGAGATTTTG AATGGCCGTA AAAGGGACTC GTCCCTATCG 
    GCACAAGATT GGCCTTTCCA GATGATGCGT TACGAACATT TTTGTTCTAA 
    TCCGTATGAC TGAATATCTT AACTAAACCG AACCGAACCG AATTTGAACT 
    AACCGGAATG TATACACGAA GTAAAAACAA TAGATAAAAT GTGAAAAAAA 
    AATTAAAATC CCCAAACTGT AAAAAATACA AAAAACCATA ATCAGATTTT 
    GAAATATGAA ATATTTTTGC GATTTTATTG AGTTCATGTG TATTTTAAAC 
    GAAAAAAATT ACTTGATTAG ACCAAATTGG TTCAGACAAC CTTAAATCTA 
    TAAATTGGTT TGTTAGATTT TACACCAATT TGATCACTTA ACTAAATTAA 
    TTAAATTAGA TGATTATCCC ACCATATTTT TGAGCATTAA ACCATAAAAC 
    CATAGTTATA AGTAACTTTT TTAATCGAAT ATGACTCGAT TAAGATTAGG 
    AAAAATTTAT AACCGGTAAT TAAGAAAACA TTAACCGTAG TAACCGTAAA 
    TGCCGATTCC TCCCTTGTCC AAAAGACAGA AAACATATAT TTTATTTTGC 
    CCCATATGTT TCACTCTATT TAATTTCAGG CACAATACTT TAGGTTGGTA 
    ACAAAACTAA AAAGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8206255 [Map]; Strand: c
      • AT2G18940.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24588 - 5-prime edge 
    TTCCCTCACA AACCTCCATA CCCAATTCAA TCCAAGAGAC CTCCACCATC 
    TCAATCCTCT AACCAATCTA TCAAATTCAG TTCCGCTACT CTTCACTTAC 
    CTCCTCCTTC TCCTCCTTCT TTCCCTCTCG ATTCTCTTCT TCACCATCTC 
    GTTCATCTCA CTCGA

AT2G18940.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 70772 Blast hits to 15680 proteins in 317 species: Archae - 4; Bacteria - 89; Metazoa - 1190; Fungi - 1125; Plants - 65689; Viruses - 0; Other Eukaryotes - 2675 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18950.1

Model type
Protein coding
Short Description
homogentisate phytyltransferase 1
Curator Summary
Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.
Computational Description
homogentisate phytyltransferase 1 (HPT1); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 1047 Blast hits to 1044 proteins in 315 species: Archae - 194; Bacteria - 477; Metazoa - 7; Fungi - 6; Plants - 190; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR