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GT24626

CSHL Arabidopsis genetrap mutant lines

Original: GT24626

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24626

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111898 [Map]; Strand: w
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -731; Region: promoter
      • AT3G12915.1 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -936; Region: promoter
    Flanking Genome Sequence: GT24626 - 5-prime edge 
    GAGAGAACCC AATTCGATCA GAGGTATGCT TTCTCTTCTT GACAACAAGT 
    AAAGTAAACA GGGTTTCTGT TTCTCCACTT CCTTTTATGG TTTTGGTTTT 
    GAAAAGTGAA ATCTTTATGT GAAAGTTCCA TTTTTTTGTT TTAATAGGAT 
    TTGAGATTAA TGAGTAATTT AAAATAAGTG AGGCTATTTA GGCCCTAAAG 
    ACAAAAAAAA ATCCTAACTT TTTGTCTTTT TTTATTAAAC TAAAATATCA 
    GGGGCAGGAT TTACAATCTT TATTTTTTCT GGATAGTTTT CAGGATTTTA 
    GTTGGTAAAA AAAAAGGTAT AAAATCATAA ACCAATAACA CCATAATTGA 
    AATCATTAAG AATCATAAAT TCATTGGTTT TAGTTTAATA ACATGAATTT 
    TTAAGGACTT TATTAAATTA GGAATC

AT3G12915.1

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 62937 Blast hits to 55974 proteins in 4670 species: Archae - 1189; Bacteria - 40681; Metazoa - 3235; Fungi - 1899; Plants - 1092; Viruses - 1; Other Eukaryotes - 14840 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12915.2

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1).
Link
InterPro Scan - TAIR