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GT24630

CSHL Arabidopsis genetrap mutant lines

Original: GT24630

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24630

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11896087 [Map]; Strand: c
      • AT4G22590.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT4G22592.1 - [+] show detail - conserved peptide upstream open reading frame 27
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT24630 - 5-prime edge 
    TGATGTTTTT GTTTTATTTA TTGAATCCTG CTCTGTTCTT TCGTACCTTT 
    GAGCATTGGT TTAGGCAAAA CTCATTGTAT AAGAAGTTAA ACAGACTTGA 
    ATTGAAAATA GGAACTAATT GGACATGTTT AGAATTGGTT GATTTGTTAA 
    AACGCGTGAT GTGGTCAAAT ATTGAGTGAG TATGCTACAA GTTTTTTTGT 
    CGGTAGGCAC TTTAATAAAT AAATAGTTAG ATGTCCTATA GACGAAGGCA 
    GTTTGAAAAT TTCGGTACTT GTCAAAATCA GTGGCTCCCT CCTTTTTCTT 
    TATATCATTA AACTACAAGA TGGGTAACAC ATGACTTTCT TTTTGACTTT 
    TTATGTTCTT CTCTCTCGAC AAGACATGTC AAGTTTCTTA AAAAAGCCTT 
    TGTTATGAAA CCCCAAAAGT TACTAAATCT TGTATTTTGT GTGGTCATTT 
    TGGTCGTATA TACAGGTTTG TGTGTGATAG CGTTGTTGTG GTAAAAGCTT 
    TGTACATTTG AAGATTTAGA GATGATAAGG TAATGTAAAC AGCTTTTTGG 
    TTTTGCGGTC ACTTTTAAGT TCTCATGAAA AAAGCTTTTC AAATTTGCTG 
    AATGTTCTGT TTTGTGGTCA TCTTTCAGTT TTCAGGTAAC CTACTTTTAA 
    TGGACAGTTC AACAACAAGC AGTGA

AT4G22590.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G12430.1); Has 2353 Blast hits to 2348 proteins in 847 species: Archae - 42; Bacteria - 1327; Metazoa - 222; Fungi - 153; Plants - 482; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22592.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 27
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF27 represents a conserved upstream opening reading frame relative to major ORF AT4G22590.1
Computational Description
conserved peptide upstream open reading frame 27 (CPuORF27); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR