GT2949

CSHL Arabidopsis genetrap mutant lines

Original: GT2949

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
  • stunted plants
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: GT2949

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174041 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -230; Region: promoter
    Flanking Genome Sequence: GT2949 - 3-prime edge 
    NCGGCGACCG TTACCGACCG TTTTCATCCC TAGCAACAAG ACTCTTCTTC 
    TCACTCGACA ACAACGCCAC TTCCTTCTGG AAATCACTAG TTTTCTCAAG 
    GCCAGACAAT AAAACATCGT ATGTCCCCAA AGAAGGCATT ATCTCTCGCT 
    CTCTCATCTC TCGTAATATC TTCATTGCTT TCTCTGGACT CCCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174136 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -135; Region: promoter
    Flanking Genome Sequence: GT2949 - 5-prime edge 
    TGCACGTTTC CGAAAAAATG TTCATCTCAA TCGACAAATA TGTGATCTTC 
    TCTTTGCGAC AAATCTGTTG TAATCTGGTT GCAGGTGAAA GTCAACATGT 
    ACATGTTTAA TCTAGGCCCA TTAAATATGA GGCCTATACT GTTTTTAAGC 
    CCATT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR