GT525

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT525

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 29558732 [Map]; Strand: c
- AT1G78580.1 - [+] show detail - trehalose-6-phosphate synthase
  Distance: 0; Region: intron1 (5UTR)

GGGGNANNNT TNAAAATGGT GNTTCGTTTT AANCGACCGT TANGGACCGT 
TTTCATCCCT ATACAGACCA ATAAAAAAGA AGAATGGAAT TTTTACCCCT 
AACTAGCCAA AAAACAAACA AACTGAAGTC TCATGTAAAC GTTAAACAAG 
CACTTGGTAT GGACAGANAT GTTGTTGGTA GCCACAATGT CAAAAACACG 
TGTGAAAATA AGATTAATTA AACTCTAATT TGATATTCGT TATAGCTTTC 
AACCACTAAC AAGTANGGGG TCAAATCAAA TTATGCATAA AGGAGGATGC 
TTAAGTTAGT GTCTTCTATA ATGTTGCACA AAGACACCAG ATAAAATACA 
ATTTAACTAA CCTTTTTCCC AAAGATTATA AGACTACTGT CAAGCAAATT 
AACTCTTGTT TAGTAACAAC AGAAAGAAAA AGAGAATCAG ATACCCGAGT 
CAGAAAAGAA AAAAAGTGTT TCTTNTCCCN CCANGNAACT GGAATGTGAC 
TTTTGAAAAN GGGGGGTAAA TTCGACAACT GACTTTCTAC AACACACTCT 
CTTGCAGANA TAACAAATGT CAAACTTTTG AATGATATGC CCATTAGAAA 
ACAATGTACA GTAAGTAAGA AATGGCTTCA AAAGACGATC ATTCAACGTC 
TTTCTTCTCT CTCCAAAAAA AA

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 29558701 [Map]; Strand: c
  - AT1G78580.1 - [+] show detail - trehalose-6-phosphate synthase
    Distance: 0; Region: intron1 (5UTR)
Flanking Genome Sequence: GT525 - 5-prime edge
```
TTTCCCATCC TACTTTCATC CCTGGGTCTG TAAAAAAAAT TCCATTTCAA 
GTAAGAAGAA AGGGAGATGT TTCTACGTTG TATTCCCCAT AGTCAAATCT 
AACGTCAGCT TCGGCCGAGT GAGAGGGGTC AATTTCATTC AGCTTAAATC 
CAACTTTTTT T
```

AT1G78580.1

Model type: Protein coding
Short Description: trehalose-6-phosphate synthase
Curator Summary: Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain. ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.
Computational Description: trehalose-6-phosphate synthase (TPS1); CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 2 (TAIR:AT1G16980.1); Has 6189 Blast hits to 3807 proteins in 1021 species: Archae - 45; Bacteria - 1772; Metazoa - 831; Fungi - 808; Plants - 384; Viruses - 0; Other Eukaryotes - 2349 (source: NCBI BLink).
Link: InterPro Scan - TAIR