GT5364

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT5364

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 545267 [Map]; Strand: c
  - AT4G01310.1 - [+] show detail - Ribosomal L5P family protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G01320.1 - [+] show detail - Peptidase family M48 family protein
    Distance: -529; Region: promoter
Flanking Genome Sequence: GT5364 - 3-prime edge
```
GGGGAAGGAT TTGGGGTTAC CTGGTGAATA TTAACGTACT TGAACTCTTC 
TTTGAGCGCA GGGATAATCC TCTCGAGGTA AGCGGTTTTG AGGCGTGGAG 
TTTTCTCGGC TTCATCTCTC TCGACGAGTA CAGTTCCAAA CGCCGAGACT 
TTCACCACCT TTCTGAGCGG CGGAGAGAGC ATTCGTGCGG AGGATGGATC 
CGCTAATGGT GAGAAACGTC CGTGA
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 545119 [Map]; Strand: c
- AT4G01310.1 - [+] show detail - Ribosomal L5P family protein
  Distance: 0; Region: intron1 (CDS)
- AT4G01320.1 - [+] show detail - Peptidase family M48 family protein
  Distance: -677; Region: promoter

TCTGTTGCGA TTGATTGAAG TCTAATTCTC AGTGAATTCG AATTTTTTGA 
GCGAATGTTA AACCTAATTT GCTTTTAATG ATAAGTTTGA ATTGATTTCT 
TCTAGAAAAT GTAGTGAAGA AGCCTAGATT TAAGATTGTT GTGTTGATAA 
AATCGTGCTG TTGGGATGTG CCATTTACAA ATGTGAATGT GAATTTGTCA 
ATCTCATCAT TGTTGTATAT CTGCTTGGAC ATCTTCTCTA CCAGGTTCCA 
AAGGTACAGA AGATTGTAGT GAATTGTGGT ATTGGAGATG CGGCGCAAAA 
CGACAAGGGT TTGGAGGCTG CGATGAAGGA TATCGCGCTT ATCACAGGGC 
AGAAACCTAT TAAGACACGA GCTAGAGCTT CCATTGCTAC TTTCAAGATC 
AGGGAAGATC AACCTCTTGG GATTGCTGTC ACTCTCAGAG GAGATGTGAG 
CTATATTTCT CTTGACTAAT CAAACTTTCC TTTTGAGTTA TTTATGTATT 
AACATTTTGT GATTTTGACT GTTGTGACAG CCTGACAGGT AATGTACTCC 
TTCTTGGATC GTCTTATCAA CTT

AT4G01310.1

Model type: Protein coding
Short Description: Ribosomal L5P family protein
Computational Description: Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, C-terminal (InterPro:IPR020928), Ribosomal protein L5, N-terminal (InterPro:IPR020927); Has 9219 Blast hits to 9219 proteins in 3016 species: Archae - 312; Bacteria - 5408; Metazoa - 222; Fungi - 280; Plants - 343; Viruses - 0; Other Eukaryotes - 2654 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01320.1

Model type: Protein coding
Short Description: Peptidase family M48 family protein
Curator Summary: CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.
Computational Description: ATSTE24; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity; INVOLVED IN: CAAX-box protein maturation, proteolysis; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 2991 Blast hits to 2984 proteins in 996 species: Archae - 162; Bacteria - 1572; Metazoa - 206; Fungi - 172; Plants - 49; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).
Link: InterPro Scan - TAIR