GT5560

CSHL Arabidopsis genetrap mutant lines

Original: GT5560

Phenotypes

Morphological phenotypes

Original description

  • short siliques
Anatomical entity
/structure development stage		 Phenotypes
fruit (PO:0009001)
  • decreased length (PATO:0000574)

Original: GT5560

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 254098 [Map]; Strand: w
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT5560 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCA CATGTCTCTC TATCAGCTTC 
    GGGCTATCCA CTGAATACCT GACCCCCACA AAAAAAAATA ACTACCAATT 
    ATATTTCTCC ATCTTTCTTT ACAACTACTA AAATGTGTGT TTGGAAATCA 
    ATGTGTTAAA TACCATGGCA TAGGGTCACG GAAATCCTCA AATTCCTCCT 
    GTAAAATCGG AAATCTTTCA AAATCTTCAA TAGGATCCAC TACTGGAACC 
    CACACAACCT

AT3G01680.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR