GT5806

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT5806

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 1259866 [Map]; Strand: w
  - AT5G04460.2 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT5G04460.3 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT5G04460.1 - [+] show detail - RING/U-box superfamily protein
    Distance: -143; Region: promoter
Flanking Genome Sequence: GT5806 - 3-prime edge
```
ACCCCTAAAA CCAAGAATCA CATCTTCCCC AGAATTTCTG AGAAGATCCC 
AGAAAACACA AAATCCCAAC ATCCAAAAGA TTCAAAATTT TACACCCAAA 
TGTCCTCCAA TTCATCTCTC TCG
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 2931196 [Map]; Strand: w
- AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT3G09550.1 - [+] show detail - Ankyrin repeat family protein
  Distance: -669; Region: promoter

GTAAGTTTCC CATCTCTAAT TTATATAACA AATGTTGAAT TCAATTTCGG 
ACAGTTTCAG TTTTTGTATT TTTGGGATAT AATTGCTCTT TGTTTCAACT 
GATGGTAGCT TTGTTGGAAC TGTCCCAGAA TATTGTTCTT TTTTTTGTCG 
GGAAAAAAAA AAACTTTTCC ATTTTTTTTG TTGCCCAACC AAATCCTTTT 
TTTTTTTTTT AAAAAAAATT TTGGAAAATT TTTTTTCTTT TTTTTAAAAA 
AATTTAAATT TTAAAAATTT TCCCCTGGCA AAAATCCTTA ATTTTTAAAA 
AATCCCCTTT TATTTTAAAT TTAACTTTTC CCCCCCCCCC AAAA

AT3G09540.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09550.1

Model type: Protein coding
Short Description: Ankyrin repeat family protein
Computational Description: Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G12360.1); Has 55803 Blast hits to 24932 proteins in 1099 species: Archae - 58; Bacteria - 5470; Metazoa - 27318; Fungi - 5824; Plants - 4263; Viruses - 331; Other Eukaryotes - 12539 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G04460.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1); Has 3702 Blast hits to 3505 proteins in 331 species: Archae - 0; Bacteria - 182; Metazoa - 2128; Fungi - 130; Plants - 551; Viruses - 33; Other Eukaryotes - 678 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G04460.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1).
Link: InterPro Scan - TAIR

AT5G04460.3

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1).
Link: InterPro Scan - TAIR