GT5864

CSHL Arabidopsis genetrap mutant lines

Original: GT5864

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5864

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 877044 [Map]; Strand: c
      • AT3G03620.1 - [+] show detail - MATE efflux family protein
        Distance: -244; Region: promoter
    Flanking Genome Sequence: GT5864 - 5-prime edge 
    CGGGATTAAT TTTGGGTATA TCTAATAATA CAGAGAACTA CAATTCAAAA 
    TTTTCTTTGT GAGTGTACAT ATGTGCGAAT ACACACATTA CACACACACA 
    TAGGTGAGTT TTCTAGTACA TCATAATCCG TGTTATACCC CTTGCGAATC 
    TCTATTATAT GTCTATAGAT TATCAACACG TTTCGGTTTT ACTCTGACAT 
    TTTTTCCTAA AAAGAGGAAA ACCAGGTAAC TTCAGTTTTA CAAATTTATT 
    TTATTTTCTC TATTATTTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 682671 [Map]; Strand: w
      • AT3G03030.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT5864 - 5-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCGAG AGTTGTTCGT 
    CAGTGAGACA CTCGTCAATC TCAGGTTAAA ATCTGAATTT GGTTGTATTC 
    ATTGGTGGCC TGGAGCTGAA GGCACTTTCT TACCAAGGCT TCAAAGTCTT 
    GATATAAGCT CTGCGATGGT TTTTTGTGAT GATAAGCTTC AGAAGCTTCT 
    TCCTTGTTTC CCTGTGATTG AGGAATTACG GTTGGTAGGT ATGGAGTGGA 
    TTGATTCTCA TGTAACCGTG TCGTGTGCAA CCCTCACTAA TCAGCTACTT 
    CTTAGCTCCA CCGGTTCCAG AACCTCTAAA AATCCAAAGA GCGTTTCTTT 
    TGATACTCCA AATCTGCTTT CCCTAGCCTA CTCTGATTTA GTTGCTGAGG 
    ACTATCCGTT GGTTAATATG AAAAGTTTAT TCAAGGCTCG AATCATCCTT 
    GGAGTAGATG ACGATCAAAT CGCCCGAATG CGAGCCCCAA CTAACTATTT 
    GTCAGAGGAT GATGTTGTTC GCCGATTTGG CAATGTGGTG AAGCTCATGA 
    AGGGCATACA AAATGTTCAG CAACTTCACT TGCATTCTGA TACACTCGAG 
    GTTAGTTTTC CAT

AT3G03030.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G03040.1); Has 1867 Blast hits to 1823 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1867; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03620.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G17700.1); Has 8317 Blast hits to 8249 proteins in 1758 species: Archae - 126; Bacteria - 5711; Metazoa - 138; Fungi - 320; Plants - 1334; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink).
Link
InterPro Scan - TAIR