GT5998

CSHL Arabidopsis genetrap mutant lines

Original: GT5998

Phenotypes

Morphological phenotypes

Original description

  • sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5998

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15602512 [Map]; Strand: c
      • AT5G38975.1 - [+] show detail - transposable element gene
        Distance: 2468; Region: intergenic
      • AT5G38980.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -4259; Region: intergenic
    Flanking Genome Sequence: GT5998 - 3-prime edge 
    ATCCCTAGCT CTGGGCATAA CCATGATTAC GGTTATAATT ATACTGACTA 
    TTTACTAACA GTTAAGATAC ATGTAATCTA GATCCTCTTT CTCCTTAAAC 
    CTAATAGTCG CTCTTCAACT TGATTGTCTT GGCCACGATC TGACCAGCGC 
    GTGATGGGTC TGAAAGTGTC GGCTTCAATC CGGGCCTTCG TGTATTGTCT 
    TTGTATACTT CGGGCTTGAA ATTATGGTGG TTTTATCAAG TTGGTTTGAG 
    TTGTTGTTGA TGGAGTTTGG TGCTAGGCGA TCAAAATCGA ATGGGCTTTT 
    GGTCGGTGGT GAGGATGGAA TCGTCGTTCT CACTATCGGA TCTCTGTGTG 
    GT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10654870 [Map]; Strand: w
      • AT4G19530.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT5998 - 3-prime edge 
    CATCCCTAGT AGTCTCACTG GTCTTTTTAN CANCCTATTG AGCCTGCCTT 
    TATTATCTTG GTTGTGATGA TGCCATATCC GGTGTCTCCC TCTTCCATCG 
    TCATCCCTGG CTTCTGGACC AAGTTCCATG GCAAACGTAT ACAAAAGATC 
    ATGCATCTCC ACTCGACTAT CAGAAATATA AATCATGAAC ATGTCTTTGA 
    GAGCGTCTAT TGTAACTGTC GCTTTAGAAA AAGCGGGACC AGATGAATCC 
    AGTAAGCTCT TTACATAAAC CAAATCATGG GATCTGAAAC AAGCTATGTC 
    AAGAAACGCA TCCTTTTGCA CTTGACTCAG TTCATCATAA GTTACCTGCA 
    AGACACGATC TCGAATATTT TGGCTGANAC TTTTTGGGAG TGATTTTAGT 
    TTCTCTTCCC AGTAAGAGAG GCTTTTCTCA CNAAGCTCTT CACCCAATAG 
    CTTGAGAATT AGTGGATGCC CTCTCGCGTA ACGCACAAAC TCTTTTGACT 
    CCTTCATGAA AGCTTCCTTG TTGTTTTGGT GGGCCGCAAA AGGACGGAAC 
    GCATAGTGAC AAAAGTGATT TAACCCATCT CGATGGCTCA ACAGCGGTAC 
    AAAA

AT4G19530.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.
Computational Description
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 17572 Blast hits to 11989 proteins in 539 species: Archae - 6; Bacteria - 936; Metazoa - 1722; Fungi - 81; Plants - 14067; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38975.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.0e-15 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster)
Link
InterPro Scan - TAIR

AT5G38980.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR