GT6020

CSHL Arabidopsis genetrap mutant lines

Original: GT6020

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6020

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25511108 [Map]; Strand: w
      • AT5G63740.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6020 - 3-prime edge 
    ATCNGTTGGC GTTTTCATCC CTAATGATGA TGAAGATGAT GATGACGAGG 
    CATGACGATG AGGATGATGA TGATGATGAT GATGATGATG ATGAAAATGA 
    TGAANAGTGC GATGATGAAT ATGATAGTCA TCGTTTAATC TCCACGCCCT 
    ATTGTNCTCA CTAGTTCTGC AAAACTTGTT GGAGGGAGTA CCTANAGACA 
    AATTTCTACT CTCTGGAGGA AAACTTAACC GTAATCTCNT GTCCTGATCA 
    AGATTGTGGA GCTTCGGTTA GACTAAAAAC GATTGAGAAA CTAGGAGTAC 
    ATGATCAAGA CTTGTNCTTG AGTTATATTA TGANAGTTTA CATTGAGAAT 
    GAGAGCAAAC AGCTCCCTGC ACCGGATGAC NACTAGGCCA TTATATTTGA 
    CCAAATTTGA NTTTACTCCA NAGGAAAATT TGGTTCTTCT TTTATGAAAT 
    GCATTTATTC CATTTTTTTA TTTTATTTTT AAATTATCGA GGATGTCNAG 
    CTGATCAGTG TAATAGTCTT TCAAANCTTA TTTATATGAA ACATCNTGTT 
    CTTCTCNCTC GANAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25511113 [Map]; Strand: w
      • AT5G63740.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6020 - 3-prime edge 
    GAATCCGNTG CNCANANTGT CGGCCCNCCN GATGATGAAG ATGATGATGA 
    CGAGGNATGA CGATGAGGAT GATGATGATG ATGATGATGA TGATGATGAA 
    AATGATGAAN AGTGCGATGA TGAATATGAT AGTCATCGTT TAATCTCCAC 
    GCCCTATTGT ACTCACNAGT TCTGCAAAAC TTGTTGGAGG GAGTACCTAG 
    AGACAAATTT CTACNCTCTG GAGGAAAACT TAACCGTAAT CTCNTGTCCT 
    GATCAAGATT GTGGAGCTTC GGTTAGACTA AAAACGATTG AGAAACTAGG 
    AGTACATGAT CAAGACNTGT ACTTGAGTTA TATTATGAGA GTTTACATTG 
    AGAATGAGAG CAAACAGCTC CCTGCACAGC ACTACCAACA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25511192 [Map]; Strand: w
      • AT5G63740.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6020 - 5-prime edge 
    ATCATCTTCA TCATCATCAG CATCATCAGC ATCATCATCA TCTTCATCAT 
    CATCCTCATC CTCGTCCTCG TACTCGTCCT CATCCGCATC CTCGTCCTCG 
    GCCTCGTCCT CGTCCTCGTC CGCATCCGCA TCCGCATCCT CATCACCATC 
    ACCATCACCA TCACCATCAT TGTTATGATC ATCATAAACC TTAATATATT 
    CATCTTCAGC CGTA

AT5G63740.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G63750.1); Has 179119 Blast hits to 41759 proteins in 2045 species: Archae - 1298; Bacteria - 52257; Metazoa - 41414; Fungi - 23882; Plants - 9817; Viruses - 3088; Other Eukaryotes - 47363 (source: NCBI BLink).
Link
InterPro Scan - TAIR