GT6112

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

lobed cotyledon(s)

Anatomical entity /structure development stage	Phenotypes
cotyledon (PO:0020030)	lobed (PATO:0001979)

Original: GT6112

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 358087 [Map]; Strand: w
- AT4G00840.1 - [+] show detail - DHHC-type zinc finger family protein
  Distance: -808; Region: promoter
- AT4G00850.1 - [+] show detail - GRF1-interacting factor 3
  Distance: 0; Region: intron1 (CDS)

TATTTTACCG ACCGTTACCG CACCGTTTTC ATCCCTACAT ATGCTGCTGT 
AAACATGAAC TTAAGTGACG TCCACGTAGT GTCAACATGT CATCTTCACA 
ATCTGATTTT AAGCTTTCAA ATCTCATATG CATACAAATA CTCTGTTTTC 
ACTCAAAAAA AAACTCCAAA CTCATGATTG TACATCCAAT TCCAGTAACA 
AAAAAAAGTT AAAGCGGAAA ACAATGACAC TTTAAAACAA ATTATACTCA 
AGAAGGAAAG TTCATTACAA CAGTTTAAAC TACTCAAAAA CATCATTACA 
CAACCAATTT CAAAGCTACC ATAAACAGAC ATTATGACTA AACAACAGAA 
AGACAAAAAA

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 358525 [Map]; Strand: w
  - AT4G00850.1 - [+] show detail - GRF1-interacting factor 3
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: GT6112 - 5-prime edge
```
TGGCTCCTAA TCCGTCATCA ATGCAGCCAC CACCAAGCTA CTTCATGCAG 
CAACATCAAG CTGTGGGAAT GGCTCAACAA ATACCTCCTG GGATTT
```

AT4G00840.1

Model type: Protein coding
Short Description: DHHC-type zinc finger family protein
Computational Description: DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1); Has 5117 Blast hits to 5115 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 766; Plants - 830; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00850.1

Model type: Protein coding
Short Description: GRF1-interacting factor 3
Curator Summary: Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA
Computational Description: GRF1-interacting factor 3 (GIF3); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 2 (TAIR:AT1G01160.1); Has 414 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 279; Fungi - 27; Plants - 81; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR