GT6491

CSHL Arabidopsis genetrap mutant lines

Original: GT6491

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6491

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5136105 [Map]; Strand: c
      • AT4G08140.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT6491 - 3-prime edge 
    AAGAAACACT NCACTTACCG TTTTCATCNG TCCCNNGGGC CAAAGCTCTA 
    NNCATTNCAC TTTNTCNNGA NAACCANCAA GGGTACANCT GACCCTTACC 
    TATAATNCAT CTAGTANTTG TTGTCTGAGT TTGATTTGTT GATTTTGCTT 
    TTGATATGTG ATTATNTGAT GTCTGCTTNC GATTAGTTGA TGTCTGCNTA 
    TGATTATTTG ATGTCCGGTT TTGATTATTA GTNGTCTGCT TTGGATNAGT 
    TTTTTNGTNT CTCTGTTTAA ATGCNATGAN NNCTTNNANT TGANATAGCA 
    TNACATTAAT ATATTAAATG CTTANAAGAA AGTATTTGTT CNCTATGGTT 
    AGTTAAAATT CTAACACCNT TGATCAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5135963 [Map]; Strand: c
      • AT4G08140.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT6491 - 5-prime edge 
    TAAGCCATAC CAATATAAGA ATTGTTAATA ACTTGAAATC AATGATGACA 
    TACCTTGAGA TTAGAATCAG CCATTGTTTC ATGAAACGCT TTAAGAGTTA 
    CATACTGGGG ACGCAGAAAC TTTAGTGGTT TGGGAACTGA AGTCATTGAA 
    CTTGTTGAAG CTCGGATTTC CTGCCTACAA AACCAAAAAA AAATAAAAAC 
    TCCAACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5136023 [Map]; Strand: c
      • AT4G08140.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT6491 - 5-prime edge 
    CCTCTCTGCN AATNNGTGAT ATCAGAAATG TACTTCTGCA AACATAGCAA 
    ATGTAATTTN TAAGCCATAC CAATATAAGA ATTGTTAATA ACTTGAAATC 
    AATGATGACA TACCTTGAGA TTAGAATCAG CCATTGTTTC ATGAAACGCT 
    TTAAGAGTTA CATACTGGGG ACGCAGAAAC TTTAGTGGTT TGGGAACTGA 
    AGTCATTGAA CTTGTTGAAG CTCGGATTTC CTGCCTACAA AACCAAAAAA 
    AAATAAAAAC TCCAACANGG GTANAACACA AGGAGCANAA AANAAAGAAA 
    AACTTTATAA TTTATGANCT TCAAANACAG TAATCTGAAA ACCCGAANCT 
    AATCAATTCA AAAATTACCT CATACTCTCA ANAGCANCCT TCTGCAATTC 
    CGGATTAGGA TTCTGAACCA TCTCAACATA AAGCTTANGG TTCTGCTTTA 
    GTTCCAAATC CNCTTAAAAC TACAATCACA ACCCAATGTA ANTCNAGTCA 
    TTAGTCCTGT GAACATATAT

AT4G08140.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S2 1A (TAIR:AT2G20580.1); Has 381 Blast hits to 381 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR