GT7011

CSHL Arabidopsis genetrap mutant lines

Original: GT7011

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7011

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2980931 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: -225; Region: promoter
    2. Chromosome: 4; Position: 15556328 [Map]; Strand: c
      • AT4G32205.1 - [+] show detail - transposable element gene
        Distance: 169; Region: intergenic
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 87; Region: intergenic
    Flanking Genome Sequence: GT7011 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTCGCAT ANAGTTTTAA 
    ATTTTTTAAT TTTTTTAACA AACGCAAAAT TAGCCTGATT AAAGTTATTG 
    ATAGAAATTG CATTAAAAAT TAAAACATCA TCACTGCAAA TAAAACAATA 
    TTTTAACTCA TCTTTTCCTG AAATTGAAGT TGACAAATTT CATGAAGAAA 
    ACTTGTAGCA AAAAGAGTAA CGTAGCAACA GAACTTTGGT AAACATTTAT 
    TACATCATTC AAAAAAGGTC TGAGAACAAA GAAAAGCAAC AAACATACCC 
    CCAAAAAAGC CTCGAATCCA AAGAAACAGG TGCTAAATCT TTACCTTTTC 
    AAGACAGAGT TTAACAAATG TTTTCTTGTC TCCTTATTAA TCATCTCAAA 
    GAAACTCTTA CTGGAGACTT TGGCGGCTTC ATCGAAAGAG CTTTGGTAAA 
    GGTTTTTAAT GGGTCAAGAG TGAGTGAGTA CTCTTGATAG TATGATAAAT 
    AGCGGCTAAT GCAGTAACCG AGGTGATGAC TGGAAGTTGC TGTTGTGTAT 
    GGTAAAGGAC TTGGTAGAAA CTCGGGTAGG TGAGGCAGAT CATACCCATC 
    TTC

AT4G32205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1)
Link
InterPro Scan - TAIR

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR