GT7200

CSHL Arabidopsis genetrap mutant lines

Original: GT7200

Phenotypes

Morphological phenotypes

Original description

  • blanched cotyledons; tiny plants
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • yellow (PATO:0000324)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT7200

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23296245 [Map]; Strand: w
      • AT3G63030.1 - [+] show detail - methyl-CPG-binding domain 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7200 - 3-prime edge 
    TATTTTACCG ACCGTTACCG CCCGTTTTCA TCCCTACAAC GAAGGCAGCG 
    ATTTCATTGC GACTCCTGAG CTTCTTCCCG GTAGGAGTAA AGTAGTAGGT 
    ATCCATCTTA GAGTAATCTT TTCTGAGAAC TAAGCTTCTC TTGAAACCTT 
    TAGGCGTTTT GGGGAGACCA GGCTTGTCAA TGACCCAAGT CCGAGAAGAA 
    TCGTAGTCAA TATCAGCAGG CTCTTCACAA GACATGCCCT GTTTCTTCTG 
    ACAGTTAAAA GGATCCTCGA GCATTTTACT TCTGATATCT TCATATTCCT 
    CCTGGCTATC AATCACCCTC CACTTGTGAC AGTTATCGCA CTGTGCAGCA 
    TAGGTATCAA TCAACCTCCC AGGAGCAACA TCTTTCTGCC ATTAAGTCTC 
    AGTGAAACAA CCCCACACAA GACTTGTGAG CGTAGAAGAA ATATATAATG 
    TAAGGCAAGA ATAAGGAGCG ACACTACTCC AGCAAGCGTT AAAGAAAAGA 
    ACCAAGGCTT TCTTAGAGCA ATAACTGAAA GCAACGACAC ATCACGAGAC 
    TGACTCAAAG TTTGCAAGAC CAAAGATTTC AAAGTTAACT ACCAACAATT 
    TACT

AT3G63030.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 4
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 4 (MBD4); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 1 (TAIR:AT4G22745.1); Has 159 Blast hits to 159 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR