GT7208

CSHL Arabidopsis genetrap mutant lines

Original: GT7208

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7208

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15607022 [Map]; Strand: c
      • AT5G38980.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7208 - 3-prime edge 
    TAGTTCGTCG TACATAACCT ATCCGGTCTT GCGACCTCAG CAGGCATGTA 
    ATCCTTGTAG TGGAACCGTT AAATATGCCA ATAAGAAGAA TTGTCTTGTC 
    TACACCAGAT GCAAACGCGG TCTTAAGGGC ATGTAACATA CTCCTTATAT 
    ATTCTCTATG TTTCAGTTTG TGTCGTTCTA AGCGTTTGGG AAATAACTTG 
    CTTGTAACAA AATGTACGGT GTCTTTTGTT GCCAAATTAT CGAGTGTTGT 
    TTCTTAATAA TTTTCCTTAA AGTCAGCGAA GTAATTATTC TATAAAAACT 
    AAGAGTTGCT CTATCTAGAT ATATATACAA TTGTGGACTA CTTCTTTAAA 
    AATTAAATAA ATTGGTAAAG TTTAAAGGTA CGTCTCCCAA GCAGAAACTG 
    AACTAAAGAA TTCAGGACCA AACTCCTTTG AAGGGAAACA CTCAAAAAAC 
    AAAAACAAAA AAAAGATTCA TTTGGTAAAC ATAATAATAG TGAAGAAAAT 
    ATAATATGCC AAAAGTGGGT TTTGAACTCA TGTCCTTATG GAAGTGCAAG 
    TTTACGTATT AATGTATTAT TCAAGTGTAC TAATCGCAAG TAAGAAAGGA 
    CGAGAAGTTC AGAAGCTGTG TTCGGGATTT GTTGCTTTTC CTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17903922 [Map]; Strand: w
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon4 (3UTR)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon3 (3UTR)
      • AT4G38170.1 - [+] show detail - FAR1-related sequence 9
        Distance: -636; Region: promoter
    Flanking Genome Sequence: GT7208 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTCCATCCC ATACTATATA GGCAGAGAAC 
    GATCAACCAT CTCTTTGTCA TCAAATGTGA CCTTTGACTA GGGGCCTCCA 
    TATTTGTGGA ATGACTAGGG GCTTTTTACC CACCCATACT TCCGACAAGC 
    AGCTAGACTG CATTGCTGCA TATTCTGTTC TGCAGTTAAG CTAAGCAAAC 
    ACTTCTTTTG CTTGTCGGTT GCTGCAATAA TCACAAGCCA ATAATGACAC 
    TGACTTATCC AACAACATAT ACATCCCATT TTGATTGCAG TTGAATACCT 
    GAAAACACAG GAACCACTCT ATGGATATGC ACTTGATCGG GCCATGGTGG 
    TGGTTCTATC ATAATTAGGT AATTTTCAAA AGGAAGTGTA AAATCCATGA 
    TAAACGAATG CATAGTGAAT AATCGATGAT ATCTGGAAGA AAACACTCTA 
    TTGATATCAC AATCACTCAA GGTAAAGCTC GTGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17894081 [Map]; Strand: w
      • AT3G48330.2 - [+] show detail - protein-l-isoaspartate methyltransferase 1
        Distance: -106; Region: promoter
      • AT3G48330.1 - [+] show detail - protein-l-isoaspartate methyltransferase 1
        Distance: -106; Region: promoter
      • AT3G48275.1 - [+] show detail - pre-tRNA
        Distance: -330; Region: promoter
    Flanking Genome Sequence: GT7208 - 5-prime edge 
    CTTTCTCCCT GAATGGAGGC AAAAGCAGTG TGAGAGAGAG AAGAACTGAT 
    CGGAGAGGAA TGGGAAAGTG ATGACGAATG CGCATAATAG CGGAAATTGC 
    ACGCAACAAG AGTAAAGGGA ATCATTATCG TGCGCGTGTT TTTGGGGAAT 
    TTTTTTTTGC AACGTTCCCC ACAGCTTTTT TATATTTTAG TATTTCTTAT 
    TTGTATCCCC AAACTATTTT TCTTTATCAG TTTGGCCCAA AATGTTTGTT 
    TTTGCTACTT TATGGTCTTT TTGTTTGCAA CATTTCTCTA TCTTATTTTA 
    GCATTTATCC CATATTTTTT ACCTTTTGTA TATATGGCCC AAAATGTCTG 
    TTCTTTGAGG TTTTGAATTT TTTGGCACAT CACAGATAAC TGAGCAAAGT 
    TGCCCTTATA GCTCAGTGGT AGAGCGTCAG TCTTGTAAAC TGAAGGTCCG 
    TAGTTCGATC CTGCGTGAGG GCACCTTTTT TTAATTTCTC ATCACCAAAA 
    TGGAACCTGA AATGTAGTCG TTTAGAAGTT TATAACGTAA AAACACAAAA 
    CGTCGTTTTG AAGATTCAGA CTCCACAAAA ACCTCAATGA TTACGAGAGA 
    ACACACGAGC ACGACCGTCG TAGGCTTCGC TTTAGGGTTA ATCTGAGTAT 
    GGCGAATCTT ATGCACAGAT TTCTCAGGAA CCAATCATGT TTAAGAGCAA 
    TCCCAAGGCT TTGATCCGCT AGTTCATGCA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17904014 [Map]; Strand: w
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon4 (3UTR)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon3 (3UTR)
      • AT4G38170.1 - [+] show detail - FAR1-related sequence 9
        Distance: -544; Region: promoter
    Flanking Genome Sequence: GT7208 - 5-prime edge 
    ATGTACCTGT CATATAAAAT GAAACCCCCT CTGCTCTCTC TTTTGGATGA 
    GATCAACCGT ATTTTAAACC GGCCAAACTT GAAAGTTTTT TTGGGCTTCA 
    AATGCTCTTT CAAGTAAAGT CCCTTTGGTT ATTCACGTTT GGTAGCTATT 
    CTTCTCTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13874036 [Map]; Strand: w
      • AT2G32710.1 - [+] show detail - Cyclin-dependent kinase inhibitor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G32710.2 - [+] show detail - Cyclin-dependent kinase inhibitor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7208 - 5-prime edge 
    TTTCTGAAAG TGTTGTCTTT GGTATAGACA ATGATTTGAT TGCTGAAATC 
    AATAAAGATC CAACCTTTGG CCAAAATTTC TTCGACCTTG AACAACAACA 
    CACTCAAAGG TATCATCTTT CTTCATCAAT TTCGACCTAA TTTTTTGGGG 
    GATTTCTTAT TTTTATGAAT CTGTGTGAAT TTGTTCTGTT TCTTGAGAAA 
    ACTTTGGTAG TGGATTTGAA AATTTCCGTT GTTAATTTGA AGAAAGGATC 
    AATCTCTTGT CTTGTATTTG GTTAAAATTG AAACTGGCGT TTTCGATTTT 
    GAAATTTAAT GATATTTTTA CCATGTGTTT GATATGATGC CATCTTTTCT 
    TTATCTGACA ACACCAGACT CTTCTCTCTG TT

AT2G32710.1

Model type
Protein coding
Short Description
Cyclin-dependent kinase inhibitor family protein
Curator Summary
Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.
Computational Description
Cyclin-dependent kinase inhibitor family protein; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701), Cyclin-dependent kinase inhibitor (InterPro:IPR003175); BEST Arabidopsis thaliana protein match is: inhibitor/interactor with cyclin-dependent kinase (TAIR:AT5G48820.1); Has 276 Blast hits to 276 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 4; Plants - 203; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G32710.2

Model type
Protein coding
Short Description
Cyclin-dependent kinase inhibitor family protein
Curator Summary
Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.
Computational Description
Cyclin-dependent kinase inhibitor family protein; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: inhibitor/interactor with cyclin-dependent kinase (TAIR:AT5G48820.1); Has 276 Blast hits to 276 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 4; Plants - 203; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48275.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Thr (anticodon: TGT)
Link
InterPro Scan - TAIR

AT3G48330.1

Model type
Protein coding
Short Description
protein-l-isoaspartate methyltransferase 1
Curator Summary
encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.
Computational Description
protein-l-isoaspartate methyltransferase 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process, response to salt stress, aging, response to abscisic acid stimulus, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: protein-l-isoaspartate methyltransferase 2 (TAIR:AT5G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48330.2

Model type
Protein coding
Short Description
protein-l-isoaspartate methyltransferase 1
Curator Summary
encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.
Computational Description
protein-l-isoaspartate methyltransferase 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process, response to salt stress, aging, response to abscisic acid stimulus, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: protein-l-isoaspartate methyltransferase 2 (TAIR:AT5G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.2

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.3

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link
InterPro Scan - TAIR

AT4G38170.1

Model type
Protein coding
Short Description
FAR1-related sequence 9
Computational Description
FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38980.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR