GT7763

CSHL Arabidopsis genetrap mutant lines

Original: GT7763

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7763

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28323095 [Map]; Strand: w
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: -4720; Region: intergenic
      • AT1G75460.1 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: -4791; Region: intergenic
    Flanking Genome Sequence: GT7763 - 3-prime edge 
    TATTTTCAAA CCAAAGGAAT AATTAAATAA GTTGCATCAA AAGATTGACG 
    AGGCAGAGTC TTTAGACTTT AGAGCAAAAG TGTTTAAAGT AATTGATGGT 
    GTTCTTCGTT CGTTTTTCAG AAAAGATTTA TTTTTCTTAT AATAGTTCAT 
    TTGGTCTAAC ACGTAAGAGG TGAGAATGAG ACCGACTTTC T

AT1G75450.2

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1).
Link
InterPro Scan - TAIR

AT1G75460.1

Model type
Protein coding
Short Description
ATP-dependent protease La (LON) domain protein
Computational Description
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G19740.1); Has 3715 Blast hits to 3715 proteins in 882 species: Archae - 0; Bacteria - 1742; Metazoa - 186; Fungi - 45; Plants - 112; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink).
Link
InterPro Scan - TAIR