GT7834

CSHL Arabidopsis genetrap mutant lines

Original: GT7834

Phenotypes

Morphological phenotypes

Original description

  • very tiny, yellow plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • yellow (PATO:0000324)

Original: GT7834

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10769536 [Map]; Strand: w
      • AT1G30455.1 - [+] show detail - transcription regulators;translation initiation factors;zinc ion binding;tran...
        Distance: -186; Region: promoter
    Flanking Genome Sequence: GT7834 - 3-prime edge 
    TCACATTTGA AGTGTCTTCG TTTTCTTTTA TAGTCCTTTT TTTGGTAATA 
    ATCATTGAAC TATAACTCCT TTCTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17110869 [Map]; Strand: w
      • AT2G41997.1 - [+] show detail - low-molecular-weight cysteine-rich 51
        Distance: 0; Region: exon1 (CDS)
      • AT2G41000.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: -576; Region: promoter
      • AT2G41000.2 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: -576; Region: promoter
    Flanking Genome Sequence: GT7834 - 3-prime edge 
    GACCGTTTTC TCCCAGTTAC TATCTCTCGT ACCAACAATG AACAGAAGAT 
    ACGATGACAA GGACAGTGAA AAGAAATGCA ATTAAACTTG TCATGTTGAT 
    TGCCCTTTTT TATGATAATC TCTTAACCTG TTTTTATTTT AAATGTT

AT1G30455.1

Model type
Protein coding
Short Description
transcription regulators;translation initiation factors;zinc ion binding;transcription activators
Computational Description
transcription regulators;translation initiation factors;zinc ion binding;transcription activators; FUNCTIONS IN: transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT2G45100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41000.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G08910.1); Has 23632 Blast hits to 23626 proteins in 3271 species: Archae - 169; Bacteria - 9664; Metazoa - 3923; Fungi - 2297; Plants - 2373; Viruses - 11; Other Eukaryotes - 5195 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41000.2

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G08910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41997.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 51
Curator Summary
Encodes a Defensin-like (DEFL) family protein
Computational Description
low-molecular-weight cysteine-rich 51 (LCR51); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT2G40995.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR