GT7973

CSHL Arabidopsis genetrap mutant lines

Original: GT7973

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7973

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14012907 [Map]; Strand: w
      • AT2G33010.1 - [+] show detail - Ubiquitin-associated (UBA) protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT7973 - 3-prime edge 
    CCTACTGAGG ATCAAGAAAT GTCTCCGTGC TTAAATCTTC CTCAACAACA 
    AAAAAGGCCA CATCCAAAGA AAGACCATCA AGAGAGATAT ATCTAGGTTG 
    CTAACTCCTA ATGTAAAACT AAGATCCCTA TTTTTCCTTT ACAGGTTCTG 
    TTTTAAGCTA AGCTTTCAAG CTAACACAAT TCGAGAAAGT AGCAAGACTA 
    TAGTAAATAG TGCAGAGGAA GAGAAGGAAA GTTACATCCA CTTGAGACGA 
    TGCCATTGGA AAATTAGCTA CGGTGAAATC AGTCGGGTCA ATGTTCGTCA 
    AACTGTACAA GTATGTGAAT GGCGGAGAAA AGAAAGATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14012905 [Map]; Strand: w
      • AT2G33010.1 - [+] show detail - Ubiquitin-associated (UBA) protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT7973 - 3-prime edge 
    TACTGAGGAT CAAGAAATGT CTCCGTGCTT AAATCTTCCT CAACAACAAA 
    AAAGGCCACA TCCAAAGAAA GACCATCAAG AGAGATATAT CTAGGTTGCT 
    AACTCCTAAT GTAAAACTAA GATCCCTATT TTTCCTTTAC AGGTTCTGTT 
    TTAAGCTAAG CTTTCAAGCT AACACAATTC GAGAAAGTAG CAAGACTATA 
    GTAAATAGTG CAGAGGAAGA GAAGGAAAGT TACATCCACT TGAGACGATG 
    CCATTGGAAG ATTAGCTACG GTGAAATCAG TCGGGTCAAT GTTCGTCAAA 
    CTGTACAAGT AGGTGAATGG CGGAAAAAAG AAAGATTCAG ATAAGGATGT 
    TCAGAGATCT TGAAAGAAGG CAGAGAGACT CATACTAAGT ATAATCGGGA 
    AGTCACCTAG AAAAAGAGCT CCCCGAAGCC TGAAACTGTG ATTGTGAAGG 
    TAGTCCTATC AATGGAAGAG GCGGGTTGGA TGTTACATCC TCTGTGAAAT 
    ATGCCTCATT CATGAAATAG TCGATGGCAA CTTGTAAACT CCATTGGCAA 
    CGCTCGAGGT AAGCGACTGC GACATCTGGA TGCAATCCAA CAATCTCACA 
    GAATTGTTTG ATGATTTCCT CTTTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14013145 [Map]; Strand: w
      • AT2G33010.1 - [+] show detail - Ubiquitin-associated (UBA) protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT7973 - 5-prime edge 
    AAACCGTCAG AGACATCCGC AATGCCATTG GCGAGCTAAC ACCAGCTAAC 
    AACAGATATT A

AT2G33010.1

Model type
Protein coding
Short Description
Ubiquitin-associated (UBA) protein
Computational Description
Ubiquitin-associated (UBA) protein; CONTAINS InterPro DOMAIN/s: UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein-related (TAIR:AT2G33000.1); Has 31 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR