GT8547

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

dark green folded cotyledons with heavy vascularization of the midrib visible after germination

Anatomical entity /structure development stage	Phenotypes
cotyledon (PO:0020030)	dark green (PATO:0001249)

Original: GT8547

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 3568668 [Map]; Strand: c
- AT3G11385.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

GGTTCTACAC CTGCAACGAA TGTTGTATCA CTATCCACCT TCATTGCTTA 
TTTGGATCTT CTTCTTATAT GAAGCCTGGT TTTAGATTCA AGTATTACTC 
GTCCAAAGTG GAAGTTCGTC GCAACAGTGT CACTCGACCG AATTGCGTTG 
AATGTGGTCA TCGTTGTCCA GGTTACATCT ACTACAAAAA CGATAACTCT 
GTAACGGTTA CTTGTTCTTT GCATTGTTTC GAGAAAAAGT TGATACCGCT 
GCAAACATGG TGAACTTTCC TTGCTATTTT GTTTTTTCAT TTTTTCTTGA 
GGGACTTGTA ACGTGACTTA CTTCTAATTC TAAAGAATAA AATCCTAATG 
AATTCGATGA G

3 prime edge [+] show sequence

Chromosome: 3; Position: 3568616 [Map]; Strand: c
- AT3G11385.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

CGTTTTCATC CCTAGTGTGA ACTATGTGAG AAAAAGGTTA ATCCAAGGGA 
TTGGTTCTAC ACATGCAACG AATGTTGTAT CACTATCCAC CTTCATTGCT 
TATTTGGATC TTCTTCTTAT ATGAAGCCTG GTTTTAGATT CAAGTATTAC 
TCGTCCAAAG TGGAAGTTCG TCGCAACAGT GTCACTCGAC CGAATTGCGT 
TGAATGTGGT CATCGTTGTC CAGGTTACAT CTACTACAAA AACGATAACT 
CTGTAACGGT TACTTGTTCT TTGCATTGTT TCGAGAAAAA GTTGATACCG 
CTGCAAACAT GGTGAACTTT CCTTGCTATT TTGTTTTTTC ATTTTTTCTT 
GAGGGACTTG TAACGTGACT TACTTCTAAT TCTAAAGAAT AAAATCCTAA 
TGAATTCGAT GAGTTTTCAT CTCTCTC

5 prime edge [+] show sequence

Chromosome: 3; Position: 3568510 [Map]; Strand: c
- AT3G11385.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

ACACCAGTAC GTCTCATCTG CCTTTTCTCC ATAGCATAGA GAAAGAGGTG 
CTTGTCGTAT TTGTAGCTTA CTTCCGTTGG AATTGTAGCG CATTGATAAC 
ACAGAGCAAA TTTGCATATG GTACATTGTA GGTAAGACCG CATACCTATC 
TTCTTGCAAC CCACGCAATA AGTCTTGGTT TCATCTCTCT GCGGCCGTGG 
AGATAAATAG AGGAGGTTTA TGACTTTTAT GGGTGAAATA TTCGGGAATT 
GATGAGATAC ATCGAACATC TATCTGAACT TGTTTGGACA CACACTTTTT 
TTCCGGACAT ATGTACCTGA AACCAGTGGA CTTTCTGGAA CAAGCTGAAC 
AATCGATGAG ATCATAGTGG TTTCGAGGAG AGGTGATTAG GATAAGAGGG 
TGTTTGTGTA ACGCATGACT CAGTTTTCGA AGAAGACCAG CACATACCTC 
GTGGAGAAAA AAGTCACAGT GTCTGCAATT GTAG

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 3568487 [Map]; Strand: c
  - AT3G11385.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT8547 - 5-prime edge
```
TTTCTCCATA GCATAGAGAA AGAGGGTGCT TGTCGTATTT GTAGCTTACT 
TCCGTTGGAA TTGTAGCGCA TTGATAACAC AGAGCAAATT TGCATATGGT 
ACATTGTAGG TAAGACCGCA TACCTATCTT CTTGCAACCC ACGCAATAAG 
TCTTGTTTTC ATCTCTCTCG ACG
```

AT3G11385.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR