GT8602

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT8602

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 2; Position: 16892286 [Map]; Strand: w
- AT2G40440.1 - [+] show detail - BTB/POZ domain-containing protein
  Distance: -994; Region: promoter
- AT2G40450.1 - [+] show detail - BTB/POZ domain-containing protein
  Distance: 0; Region: exon2 (CDS)

ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTCAT ATCTATTCGA 
CCTATGCAGA AACGAGCTTC TAACATCTCT TAACTCTTCG AATGTTTTTA 
AAGTACTTGA GCTCGCCCAA ATCCCTTTTG ACCAAGTCCT CAGTGATGCT 
GCCTACACTA CTATCAAAGC CAACAAAGGT ACAATTTTTA ACACTACCGA 
TTTCGAGGAT TTCGTCGTTA ATCACCCAAG TCTTACTGTG GAGATAGTGA 
AGGTTATCGC GGAAATCGAT ATTTTCTATG TTAACTCTCG CTGCTCTTGA 
CAGTACCTGT GGTTATTGAA AGAAAAGAAA AACCACTGTT TAGTTTCGTT 
GTTTCATCAC TTTCACAAAC CCTTTAACTC CGTATTATGA AATTCATGGG 
ATTTTACTTG TTTTGTTTCT CAAGCTTACA AGTCTTTGAA AAAGTTGTTT 
TTAGTGTTTT GATCCGTTTC TGTTTAAGAA AATCTCTTTC CCATAGATAT 
GAACATAAAA CGAACATACA AAAAAAAACA AGCTTACAAA ATTCTAAAAA 
GAAAAGATTC CTTCTCCAGC AAGTAAAGCA AATGTTTACG AAGAAAATAG 
TTGTGTGAGA TAATGATTTA AGAAAC

5 prime edge [+] show sequence

Chromosome: 4; Position: 1975600 [Map]; Strand: c
- AT4G04120.1 - [+] show detail - transposable element gene
  Distance: 0; Region: exon1 (NonCoding)

TTTGTCGGCT GCATGATAGC TGCATCCTTA TCACTGTCCC ATGCCTCTAG 
CCGTACATCG GCTGGTTGTT CTTTTATAAC CTTCAGTAAT CTATCAATGA 
AAATATATTT GTTTGTTTGT GTCCCCATAG CTATATCGTA TAACTTGGTT 
AGTTGGTTCT AATGTAGAAA ACGAATGTAG CTTATACATA TATAGAGAGA 
GCCTAGACGG TCAAAATTAC TCTTTACTTT TACTTTCGTT TTCCAAGACG 
GGTTTGGAAA TAAAATGAGA CATAAATCAA TATACGAAAA TTCTTAAATT 
ATTATCTCTC TTCTATTGAT AATTATATTA AACAAAACAT AAGTATTAGC 
AAAGTGGGAA AAAAAGGACT AATTATCATG TTTCATC

AT2G40440.1

Model type: Protein coding
Short Description: BTB/POZ domain-containing protein
Computational Description: BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G40450.1); Has 178 Blast hits to 120 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G40450.1

Model type: Protein coding
Short Description: BTB/POZ domain-containing protein
Computational Description: BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT5G48510.1); Has 2290 Blast hits to 2270 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 1375; Fungi - 7; Plants - 741; Viruses - 43; Other Eukaryotes - 124 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G04120.1

Model type: Transposable element gene
Short Description: transposable element gene
Computational Description: copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link: InterPro Scan - TAIR