GT9195

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT9195

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 2930963 [Map]; Strand: w
  - AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT3G09550.1 - [+] show detail - Ankyrin repeat family protein
    Distance: -902; Region: promoter
Flanking Genome Sequence: GT9195 - 3-prime edge
```
TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATTGC CACGTAGACT 
CCAGCCTCCG CTCTCTCGCC GGAAAGGCCG AAGGTTTCGG CCGCGCCGCC 
GTTGGTGGTC TAAATGGTCC GATTTGCCAC GTCACTTCTT TAGCTGGTAA 
ATTTCAAAAG TCCCCTTTTT CCTTCATC
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 2931038 [Map]; Strand: w
- AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT3G09550.1 - [+] show detail - Ankyrin repeat family protein
  Distance: -827; Region: promoter

CCCTGCGTGG CAATAAGGTC CCACTGTCAT GTGGTGATCG GATGGCGATG 
ACGGAGCTGG AGCTGGAGCT GGAGCGGCTG TATATGGTGG TGGGAAAGGT 
GAATTGGGAG CTTCGCCGGG AAAATTAGAA CCGCCGTGAT GGGATCTGTG 
AATGCCATGT AAGTTTCCCA TATCTAATTT ATATAACAAA TGTTGAATTC 
AATTTCGGAC AGTTTCAGTT TTTGTATTTT TGGGATATAA TTGCTCTTTG 
TTTCAACTGA TGGTAGCTTT GTTGGAACTG TCCCAGAATA TTGTTCTTTT 
TTTTGTCGGG AAAAAAAAAA ACTTTTTATT TTTTTTTGGT GGCCAACCAA 
AATTTTTTTT TTTTTTTTGA AAAAAAAGGT GGAAAAATGT TGGTTTTT

AT3G09540.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09550.1

Model type: Protein coding
Short Description: Ankyrin repeat family protein
Computational Description: Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G12360.1); Has 55803 Blast hits to 24932 proteins in 1099 species: Archae - 58; Bacteria - 5470; Metazoa - 27318; Fungi - 5824; Plants - 4263; Viruses - 331; Other Eukaryotes - 12539 (source: NCBI BLink).
Link: InterPro Scan - TAIR