GT9249

CSHL Arabidopsis genetrap mutant lines

Original: GT9249

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT9249

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8520945 [Map]; Strand: w
      • AT1G24080.1 - [+] show detail - pre-tRNA
        Distance: -582; Region: promoter
      • AT1G24090.1 - [+] show detail - RNase H family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT9249 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCTCCAG GCTTTAACAT 
    GATTTTGAAG GCATATAGAA GAAACATTCA TTCCACGGAA TAGAACTGAC 
    ATAGCTTGAT CTCTTAAGCA GTCCCAAGGC AATGTATGAA CGCGCATGAG 
    ACAGACAGTT CATTACAATG TAAGTCACCA CACACTGAGA TTTATCACAC 
    AAAAAAAAAC ACACGCACAA CTTTAGATAA GCTTCAGAGA TTCAAGAACA 
    AATGTCAAAT TACAAACATG AAATCAAAGT TGAAAAGTTT AACACTTTCG 
    CAGAATTCGT AATCTGGGTA TCTATGATTG AAGCGGATAA AGTGAAATTT 
    CTCGACGGCG AAACAAAACA GAAAATGAAA ACCAGAGGAC TGATGAAAAT 
    GAGTAAAAAA CTGATTAGTA GAGTCAAATT AAAATCTTAC GAAGCACAGA 
    GACGTGAATC TCTCGATTAA TTTGTGAGAA CTTTCCGGTG AAGAAGGAAG 
    ACGAACTCAC TCGGTGGGTT TAAGCTGGGT TTTGGTCTCA ATCCTCAAAA 
    GTTAGGGTCA ATGGGAGTTT TGAAGTACTA TCAATTTCTA ATATAGGTTT 
    AAGTATTTTG TAATGTTATC TATGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10642729 [Map]; Strand: w
      • AT4G19520.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT9249 - 5-prime edge 
    TTCATCCCTA GTGCTTATAT ATGAGCTATA GATAGATAGA AAGAGAAAGA 
    CCTGCTGTGG TTTCCTGCAT TCCACAATAG ACGGCGCATT CGCTAAAACT 
    TCGCTAACCA TGTGTGAGGG TAGGCCAAAG CAATTACTGA ACGTGTAATA 
    CCTAGGAAGC TGCTTGAAGT CCGGAGTAAT TAATTGCAGT GATGAACAAC 
    CGTGCGCATT CAAGAGCTGT AGACTTCGGG GAAGCTGTGG GAGCGATCTG 
    AGG

AT1G24080.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Val (anticodon: AAC)
Link
InterPro Scan - TAIR

AT1G24090.1

Model type
Protein coding
Short Description
RNase H family protein
Computational Description
RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19520.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class) family
Computational Description
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR